SNP Profiles matching PA 156 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGGCCGGAACCAACCGGGGAACC
1._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
2._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
3._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
4._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
5._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
6._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
7._PA_186_[PER]___
____ACGGCC__AACCAACC____AA__
8._PA_156_[PER]___
____ACGG____AACCAACC____AA__
9._PA_156_[PER]___
____ACGGCC__AA__AACC____AA__
10._PA_156_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
11._PA_156_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
12._PA_156_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
13._PA_156_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
14._PA_156_[PER]___
TTCCACGG__GGAACCAACCGGGGAACC
15._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
16._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
17._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
18._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
19._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
20._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
21._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
22._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
23._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
24._PA_72_[PER]___
____ACGTCC__AACCAGCC____AA__
25._EET_400_[ECU]___
____ACGGCT__ACCCAACC____AA__
26._CRUZ_7_/14___
TTCCACGGCCGGAACCAGCCGGGGAACC
27._PA_71_[PER]___
TTCCACGGCCGGAACCAGCCGGGGAACC
28._EQX_/O_[CHA]___
TTCCACGTCCGGAACCAGCCGGGGAACC
29._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
30._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
31._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
32._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
33._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
34._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
35._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
36._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
37._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
38._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
39._PA_39_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACCCTTCGCCTTTTCTGGGGTTACGG
1._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
2._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
3._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
4._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
5._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
6._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
7._PA_186_[PER]___
AAACCCTTCGCC__TT__________GG
8._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
9._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
10._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
11._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
12._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
13._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
14._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
15._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
16._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
17._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
18._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
19._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
20._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
21._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
22._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
23._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
24._PA_72_[PER]___
AAACCTGTCGCC__TT__GG______GG
25._EET_400_[ECU]___
AAACCCTTGGCC__TT__GG______GG
26._CRUZ_7_/14___
AAACCTGTCGCCTTTTCTGGGGTTAAGG
27._PA_71_[PER]___
AAACCTGTCGCCTTTTCTGGGGTTAAGG
28._EQX_/O_[CHA]___
AAACCTTTCCACTTTTCTGGGGTTAAGG
29._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
30._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
31._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
32._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
33._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
34._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
35._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
36._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
37._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
38._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
39._PA_39_[PER]___
AACCCTTTCGACCTTTCCGGAGTTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGAGCCGGGGTTTTTTCTCTGGAG
1._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
2._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
3._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
4._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
5._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
6._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
7._PA_186_[PER]___
CCCC__AGCC______TT____CTGGAG
8._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
9._PA_156_[PER]___
__CC__AGCC______TT____CTGGAG
10._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
11._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
12._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
13._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
14._PA_156_[PER]___
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
15._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
16._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
17._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
18._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
19._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
20._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
21._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
22._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
23._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
24._PA_72_[PER]___
__CC__AGCC______TT____CTGGAG
25._EET_400_[ECU]___
__CC__AGCC______TT____CCGGAG
26._CRUZ_7_/14___
CCCC__AGCCGGGGTTTTCTCTCCCGAG
27._PA_71_[PER]___
CCCC__AGCCGGGGTTTTCTCTCCCGAG
28._EQX_/O_[CHA]___
CCCCAGAGCCGGGGTTTTTTCTCCGGAG
29._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
30._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
31._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
32._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
33._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
34._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
35._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
36._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
37._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
38._PA_72_[PER]___
CCCCGGAGCCGGGGTTTT__CCCTGGAG
39._PA_39_[PER]___
CCCC__AGCCGGGGTTTTCTCTCTGGAG

Input profile: PA_156_[PER] RUQ_1531

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_156_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

5._PA_156_[PER] RUQ_1531

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

7._PA_186_[PER]

identical
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

8._PA_156_[PER]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

10._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._PA_156_[PER] GC-05-137-3-39

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016

16._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

17._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

18._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

19._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

20._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

21._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

22._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

23._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

24._PA_72_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

25._EET_400_[ECU]

91.7 %
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

26._CRUZ_7_/14 RUQ_1569

91.5 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._PA_71_[PER] RUQ_1564

91.5 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._EQX_/O_[CHA] GC-07-087-5-22

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

29._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

30._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

31._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

32._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

33._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

34._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

35._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

36._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

37._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

38._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

39._PA_39_[PER] RUQ_1567

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484