SNP Profiles matching PA 137 [PER]

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCACGTACAGAACCAGACCTGGCGGGCC
1._RUQ_1081
__ACGTACAGAA__AGACCTGGCGGGCC
2._RUQ_1081
__ACGTACAGAA__AGACCTGGCGGGCC
3._RUQ_36
__ACGTACAGAA__AGACCTGGCGGGCC
4._PA_137_[PER]
__ACGTACAGAA__AGACCTGGCGGGCC
5._PA_137_[PER]
__ACGTACAGAA__AGACCTGGCGGGCC
6._PA_137_[PER]
__ACGTACAGAA__AGACCTGGCGGGCC
7._PA_137_[PER]
__ACGTACAGAA__AGACCTGGCG__CC
8._RUQ_1081
CCACGTACAGAACCAGACCTGGCGGGCC
9._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
10._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
11._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
12._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
13._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
14._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
15._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
16._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
17._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
18._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
19._RUQ_36
__ACGTACAGAA__AGACCTGGCGGTCC
20._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
21._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
22._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
23._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
24._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
25._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
26._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
27._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
28._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
29._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
30._PA_72_[PER]
__ACGTACAGAA__AAACCTGTCGGGCC
31._PA_41_[PER]
__ACGTACAGAA__AGACCTGTCG__CC
32._PA_72_[PER]
__ACGTACAGAA__AAACCTGTCG__CC
33._GC-05-011-1-11
CCACGTAAAAAACCAGAACTGGCGGGCC
34._GC-05-011-1-11
CCACGTAAAAAACCAGAACTGGCGGGCC
35._GC-05-011-1-11
CCACGTAAAAAACCAGAACTGGCGGGCC
36._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
37._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
38._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
39._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
40._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
41._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
42._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
43._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
44._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
45._GC-08-051-1-62
CCACGTAAAGAACCAAACCTGTCGGGCC
46._RUQ_1668
CCCCGGACAGAACCAGACCTGTCGGGCC
47._RUQ_1625
CCCCGTACAGAA__AGACCCGGCGGTCC
48._RUQ_1059
CCACGTAAAAAACCAGAACTGGCGGGCC
 15161718192021       
_Input profile
GGAGCTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1081
__AG________CTX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1081
__AG________CTX_XX_XX_XX_XX_XX_XX_X
3._RUQ_36
__AG________CTX_XX_XX_XX_XX_XX_XX_X
4._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
5._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
6._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
7._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
8._RUQ_1081
__AGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
9._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
10._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
11._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
12._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
13._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
14._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
15._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
16._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
17._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
18._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
19._RUQ_36
__AG________CTX_XX_XX_XX_XX_XX_XX_X
20._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
21._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
22._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
23._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
24._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
25._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
26._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
27._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
28._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
29._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
30._PA_72_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
31._PA_41_[PER]
__AG________CCX_XX_XX_XX_XX_XX_XX_X
32._PA_72_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
33._GC-05-011-1-11
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
34._GC-05-011-1-11
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
35._GC-05-011-1-11
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
36._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
37._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
38._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
39._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
40._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
41._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
42._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
43._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
44._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
45._GC-08-051-1-62
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
46._RUQ_1668
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
47._RUQ_1625
GGAGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
48._RUQ_1059
__AGCCGGGGTTCTX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_137_[PER] RUQ_36

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_137_[PER] RUQ_1081

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER] RUQ_1081

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_137_[PER] RUQ_36

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._PA_137_[PER]

identical
14 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

5._PA_137_[PER]

identical
14 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

6._PA_137_[PER]

identical
14 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

7._PA_137_[PER]

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

8._PA_137_[PER] RUQ_1081

97.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

10._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

11._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

12._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

13._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

14._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

15._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

16._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

17._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._PA_137_[PER] RUQ_36

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

23._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_72_[PER]

92.9 %
14 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

31._PA_41_[PER]

92.3 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 667
 Dapeng Zhang, 2014

32._PA_72_[PER]

92.3 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

33._PA_121_[PER] GC-05-011-1-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

34._PA_121_[PER] GC-05-011-1-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

35._PA_121_[PER] GC-05-011-1-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

36._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

37._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

38._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

39._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

40._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

41._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

42._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

43._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

44._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

45._PA_72_[PER] GC-08-051-1-62

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

46._GEBP_463_/A-F_[ADI] RUQ_1668

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

47._GEBP_565_/A-F_[ADI] RUQ_1625

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

48._PA_121_[PER] RUQ_1059

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP90 2TcSNP144 3TcSNP150 4TcSNP193 5TcSNP230
6TcSNP372 7TcSNP448 8TcSNP469 9TcSNP529 10TcSNP534
11TcSNP560 12TcSNP577 13TcSNP723 14TcSNP891 15TcSNP899
16TcSNP998 17TcSNP999 18TcSNP1063 19TcSNP1111 20TcSNP1126
21TcSNP1442