SNP Profiles matching PA 124 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCACGGCCGGCCCCGGCCGGGGAACC
1._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
2._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
3._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
4._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
5._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
6._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
7._RUQ_1642
____ACGGCC__CCCCGGCC____AA__
8._RUQ_1642
____ACGGCC__CCCCGGCC____AA__
9._PA_195_[PER]
____ACGGCC__CC__GGCC____AA__
10._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
11._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
12._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
13._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
14._PA_115_[PER]
____ACGGCC__AC__GGCC____AA__
15._PA_165_[PER]
____ACGGCC__AC__GGCC____AA__
16._GC-03-032-3-11
TTCCCCGGCCGG__CCAGCCGGGGAACC
17._PA_187_[PER]
____ACGGCC__CCCCGGCC____AA__
18._GC-07-077-4-21
TTCCCCGGCCGGCCCCAGCCGGGGAACC
19._PA_189_[PER]
____ACGGCC__CC__GGCC____AA__
20._GC-03-032-3-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
21._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
22._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
23._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
24._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
25._RUQ_1436
TTCCCCGGCCGGACCCAGCCGGGGAACC
26._RUQ_32
TTCCCCGGCCGGACCCAGCCGGGGAACC
27._GC-08-275-8-47
TTCCACGTCCGG__CCAACCGGGGAACC
28._GC-08-275-8-47
TTCCACGTCCGG__CCAACCGGGGAACC
29._GC-08-275-8-47
TTCCACGTCCGG__CCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AAAACCGGCGCCTTTTCTGGAGTTAAGG
1._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
2._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
3._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
4._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
5._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
6._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
7._RUQ_1642
AAAACCGGCGCC__TT__GG______GG
8._RUQ_1642
AAAACCGGCGCC__TT__GG______GG
9._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
10._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
11._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
12._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
13._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
14._PA_115_[PER]
AAAACCGGGGCC__TT__________GG
15._PA_165_[PER]
AAACCCGGCGCC__TT__________GG
16._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
17._PA_187_[PER]
AGAACCGTCCCC__TT__________GG
18._GC-07-077-4-21
AAACCCGTCGCCCCTTCTGGAGTTAAGG
19._PA_189_[PER]
AGAACCGTCCCC__TT__________GG
20._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
21._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
22._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
23._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
24._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
25._RUQ_1436
AAACCCGTCGCCCTTTTTGGAGTTAAGG
26._RUQ_32
AAACCTGTCGCCTTTTCTGGAGTTAAGG
27._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
28._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
29._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCGGAGCCCCGGGGTTTTTTCCCCCG
1._RUQ_1642
CCCC__AGCCCCGGGGTTTTTTCCCCCG
2._RUQ_1642
CCCC__AGCCCCGGGGTTTTTTCCCCCG
3._PA_195_[PER]
__CC__AG__CC______TT____CCCG
4._PA_195_[PER]
__CC__AG__CC______TT____CCCG
5._PA_195_[PER]
__CC__AG__CC______TT____CCCG
6._PA_195_[PER]
__CC__AG__CC______TT____CCCG
7._RUQ_1642
__CC__AG__CC______TT____CCCG
8._RUQ_1642
__CC__AG__CC______TT____CCCG
9._PA_195_[PER]
__CC__AG__CC______TT____CCCG
10._GC-05-166-4-19
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
11._GC-05-166-4-19
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
12._GC-05-166-4-19
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
13._GC-05-166-4-19
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
14._PA_115_[PER]
CCCC__GG__CC______TT____CCCG
15._PA_165_[PER]
CCCC__AG__CC______TT____CCCG
16._GC-03-032-3-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
17._PA_187_[PER]
CCCC__AG__CC______TT____CTCG
18._GC-07-077-4-21
CCCCGG__CCCCGGGGTTTTTTCCCCGG
19._PA_189_[PER]
CCCC__AG__CC______TT____CTCG
20._GC-03-032-3-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
21._GC-01-034-2-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
22._GC-01-034-2-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
23._GC-01-034-2-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
24._GC-01-034-2-11
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
25._RUQ_1436
CCCC__AGCCCCGGGGTTTTTTCCCCGG
26._RUQ_32
CCCC__AGCCCCGGGGTTTTCTCCCTCG
27._GC-08-275-8-47
CCCCAGAGCCCCGGAGTTTT__CCCCCG
28._GC-08-275-8-47
CCCCAGAGCCCCGGAGTTTT__CCCCCG
29._GC-08-275-8-47
__CCAGAGCCCCGGAGTTTT__CCCCCG
 43             
_Input profile
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1642
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1642
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._RUQ_1642
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RUQ_1642
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_195_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-05-166-4-19
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-05-166-4-19
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-05-166-4-19
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-05-166-4-19
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._PA_115_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_165_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-032-3-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._PA_187_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-07-077-4-21
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_189_[PER]
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-032-3-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-01-034-2-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-034-2-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-034-2-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-034-2-11
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_1436
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._RUQ_32
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-08-275-8-47
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-08-275-8-47
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-08-275-8-47
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_124_[PER] RUQ_1576

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_195_[PER] RUQ_1642

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_195_[PER] RUQ_1642

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 1 > FP
 Dapeng Zhang, 2016

5._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 2 > FP
 Dapeng Zhang, 2016

6._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 5 > FP
 Dapeng Zhang, 2016

7._PA_195_[PER] RUQ_1642

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_195_[PER] RUQ_1642

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_195_[PER]

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B C165 T1
 Dapeng Zhang, 2016

10._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._PA_115_[PER]

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 324
 Dapeng Zhang, 2014

15._PA_165_[PER]

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 714
 Dapeng Zhang, 2014

16._EET_272_[ECU] GC-03-032-3-11

92.9 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._PA_187_[PER]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 737
 Dapeng Zhang, 2014

18._EQX_/O_[CHA] GC-07-077-4-21

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._PA_189_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 489
 Dapeng Zhang, 2014

20._EET_272_[ECU] GC-03-032-3-11

90.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

24._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._MOQ_6_/95 RUQ_1436

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._PA_56_[PER] RUQ_32

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._IMC_41 GC-08-275-8-47

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._IMC_41 GC-08-275-8-47

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._IMC_41 GC-08-275-8-47

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484