SNP Profiles matching NA 33

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGACCGAGCTGGGGAACC
1._RUQ_1577
____CCGGCC__ACCGAGCT____AA__
2._NA_33
____CCGGCC__ACGGAGCT____AA__
3._RUQ_1238
TTCCCCGGCCGGAACGAGCCGGGGAACC
4._GC-05-169-4-22
TTCCCCGGCCGGAACGAGCCGGGGAACC
5._GC-05-169-4-22
TTCCCCGGCCGGAACGAGCCGGGGAACC
6._GC-05-169-4-22
TTCCCCGGCCGGAACGAGCCGGGGAACC
7._GC-05-169-4-22
TTCCCCGGCCGGAACGAGCCGGGGAACC
8._RUQ_691
TTCCACGGCTGGACCGAACTGGGGAACC
 1516171819202122232425262728
_Input profile
AACCCTGGGGAACCCTTTGGAGTTCCCG
1._RUQ_1577
AACCCTGGGGAA__CT__GG______CG
2._NA_33
AACCCTGGGGAA__CT__GG______CG
3._RUQ_1238
AACCCTGGGGACCCCCTTGGAGTTCCCG
4._GC-05-169-4-22
AACCCTGGGGACCCCCCTGGAGTTCCCG
5._GC-05-169-4-22
AACCCTGGGGACCCCCCTGGAGTTCCCG
6._GC-05-169-4-22
AACCCTGGGGACCCCCCTGGAGTTCCCG
7._GC-05-169-4-22
AACCCTGGGGACCCCCCTGGAGTTCCCG
8._RUQ_691
AACCTTGGGGAACCCCTTGGGGTTCCCG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGAGTTGTTTCCTTCCAA
1._RUQ_1577
__CCAG__CC______GT____TTCCAG
2._NA_33
__CCAG__CC______GT____TTCCAA
3._RUQ_1238
CCCCAGCCCCGGGGTTGTTTCCTTCCAG
4._GC-05-169-4-22
CCCCAGCCCCGGGGTTGTTTCCTTCCAG
5._GC-05-169-4-22
CCCCAGCCCCGGGGTTGTTTCCTTCCAG
6._GC-05-169-4-22
CCCCAGCCCCGGGGTTGTTTCCTTCCAG
7._GC-05-169-4-22
CCCCAGCCCCGGGGTTGTTTCCTTCCAG
8._RUQ_691
CCCCAGCCCCGGGGTTGTTTCCTTCGAA

Input profile: NA_33 RUQ_1577

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_33 RUQ_1577

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._NA_33

97.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

3._NA_670 RUQ_1238

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._NA_670 GC-05-169-4-22

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

5._NA_670 GC-05-169-4-22

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

6._NA_670 GC-05-169-4-22

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

7._NA_670 GC-05-169-4-22

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

8._SPA_16_[COL] RUQ_691

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484