SNP Profiles matching NA 149

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGAACCAACCGGGGAACC
1._RUQ_1587
TTCCCCGGCCGGAACCAACCGGGGAACC
2._NA_286
__CCGGCC_AACCAACC__AA_
3._NA_286
__CCGGCC_AACCAACC__AA_
4._NA_286
__CCGGCC_AACCAACC__AA_
5._RUQ_468
TTCCCCGGCCGGAACCAACCGGGGAACC
6._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
7._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
8._RUQ_897
TTCCCCGGCCGGAACCAACCGGGGAACC
9._RUQ_877
TTCCCCGGCCGGAACCAACCGGGGAACC
10._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
11._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
12._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
13._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
14._POUND_5_/C
__CCGGCC_AA_AGCC__AA_
15._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
16._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
17._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
18._GC-08-165-4-08
TT_CCGGCCGGAACCAGCCGGGGAACC
19._RUQ_515
TTCCCCGGCCGGAACCAGCCGGGGAACC
20._RUQ_1588
TTCCCCGGCCGGAACCAACCGGGGAACC
21._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
22._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
23._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
24._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
25._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
26._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
27._RUQ_1334
TTCCCCGGCCGGAACCAGCCGGGGAACC
28._RUQ_1504
TTCCCCGGCCGGAACCAACCGGGGAACC
29._POUND_2_/A
__CCGGCC_AACCAACC__AA_
30._POUND_2_/A
__CCGGCC_AACCAACC__AA_
31._POUND_2_/A
__CCGGCC_AACCAACC__AA_
32._POUND_2_/A
__CCGGCC_AACCAACC__AA_
33._POUND_2_/A
__CCGGCC_AACCAACC__AA_
34._POUND_2_/A
__CCGGCC_AACCAACC__AA_
35._POUND_2_/A
__CCGGCC_AA_AACC__AA_
36._POUND_25_/A
__CCGGCC_AA_AACC__AA_
 1516171819202122232425262728
_Input profile
AACCCCGGGGAACCCCTTGGGGTTCCGG
1._RUQ_1587
AACCCCGGGGAACCCCTTGGGGTTCCGG
2._NA_286
AACCCCGGGGAA_CC_GG___GG
3._NA_286
AACCCCGGGGAA_CC_GG___GG
4._NA_286
AACCCCGGGGAA_CC_GG___GG
5._RUQ_468
AACCCTGGGGAACCCCTTGGGGTTCCGG
6._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
7._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
8._RUQ_897
AACCCTGGGGAACCCCTTGGGGTTCCGG
9._RUQ_877
AACC-GGGGAACCCCTTGGGGTTCCCG
10._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
11._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
12._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
13._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
14._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
15._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
16._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
17._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
18._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
19._RUQ_515
AACCTTGGGGAACCCCTTGGGGTTCCGG
20._RUQ_1588
AACCTTGGGGAACCCCTTGGGGTTACGG
21._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
22._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
23._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
24._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
25._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
26._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
27._RUQ_1334
AACCTTGGGGAACCCCTTGGGGTTCCCG
28._RUQ_1504
AACCTTGGGGAACCCCTTGGGGTTACGG
29._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
30._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
31._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
32._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
33._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
34._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
35._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
36._POUND_25_/A
AACCTTGGGGAA_CC_GG___GG
 2930313233343536373839404142
_Input profile
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
1._RUQ_1587
CCCC-GGCCCCGGGGTTTTTTCCTTGG
2._NA_286
_CC_GG_CC___TT__TTGG
3._NA_286
_CC_GG_CC___TT__TTGG
4._NA_286
_CC_GG_CC______TTGG
5._RUQ_468
CCCC-GGCCCCGGGGTTTTTTCCTTGG
6._GC-01-101-5-18
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
7._GC-01-101-5-18
CCCCGGGGCCCCGGGGTT_TTCCTTGG
8._RUQ_897
CCCC-GGCCCCGGGGTTTTTTCCTTCG
9._RUQ_877
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
10._POUND_5_/C
_CC_GG_CC___TT__TTGG
11._POUND_5_/C
_CC_GG_CC___TT__TTGG
12._POUND_5_/C
_CC_GG_CC___TT__TTGG
13._POUND_5_/C
_CC_GG_CC___TT__TTGG
14._POUND_5_/C
_CC_GG_CC___TT__TTGG
15._GC-08-165-4-08
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
16._GC-08-165-4-08
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
17._GC-08-165-4-08
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
18._GC-08-165-4-08
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
19._RUQ_515
CCCC-AGCCCCGGGGTTTTTTCCTTCG
20._RUQ_1588
CCCC-AGCCCCGGGGTTTTTTCCTTCG
21._GC-01-093-5-10
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
22._GC-01-093-5-10
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
23._GC-01-093-5-10
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
24._GC-01-093-5-10
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
25._GC-01-093-5-10
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
26._GC-01-093-5-10
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
27._RUQ_1334
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
28._RUQ_1504
CCCC-AGCCCCGGGGTTTTTTCCTTCC
29._POUND_2_/A
_CC_GG_CC___TT__TTCC
30._POUND_2_/A
_CC_GG_CC___TT__TTCC
31._POUND_2_/A
_CC_GG_CC___TT__TTCC
32._POUND_2_/A
_CC_GG_CC___TT__TTCC
33._POUND_2_/A
_CC_GG_CC___TT__TTCC
34._POUND_2_/A
_CC_GG_CC___TT__TTCC
35._POUND_2_/A
_CC_GG_CC___TT__TTCC
36._POUND_25_/A
_CC_GG_CC___TT__TTCC
 43             
_Input profile
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1587
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._NA_286
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._NA_286
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._NA_286
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._RUQ_468
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-101-5-18
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-101-5-18
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RUQ_897
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._RUQ_877
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._POUND_5_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._POUND_5_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._POUND_5_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._POUND_5_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._POUND_5_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-08-165-4-08
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-08-165-4-08
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-08-165-4-08
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-08-165-4-08
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._RUQ_515
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._RUQ_1588
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-01-093-5-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-093-5-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-093-5-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-093-5-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-093-5-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-093-5-10
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._RUQ_1334
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._RUQ_1504
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._POUND_2_/A
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._POUND_2_/A
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._POUND_2_/A
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._POUND_2_/A
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._POUND_2_/A
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._POUND_2_/A
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._POUND_2_/A
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._POUND_25_/A
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: NA_149 RUQ_801

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_702 RUQ_1587

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._NA_286

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

3._NA_286

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

4._NA_286

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._NA_756 RUQ_468

98.8 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._NA_286 GC-01-101-5-18

97.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

7._NA_286 GC-01-101-5-18

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

8._CRU_70 RUQ_897

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._CRU_100 RUQ_877

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

11._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

12._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

13._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

14._POUND_5_/C

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

15._POUND_5_/C GC-08-165-4-08

95.3 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._POUND_5_/C GC-08-165-4-08

95.3 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._POUND_5_/C GC-08-165-4-08

95.3 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._POUND_5_/C GC-08-165-4-08

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._IMC_27 RUQ_515

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_710 RUQ_1588

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

22._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

24._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

25._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

26._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._NA_916 RUQ_1334

93 %
43 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._NA_232 RUQ_1504

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

31._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

32._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

33._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

34._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

35._POUND_2_/A

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

36._POUND_25_/A

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484