SNP Profiles matching MOQ 6 /95

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGACCCAGCCGGGGAACC
1._EET_272_[ECU]
____CCGGCC____CCAGCC____AA__
2._GC-03-032-3-11
TTCCCCGGCCGG__CCAGCCGGGGAACC
3._EET_272_[ECU]
____CCGGCC__AACCAGCC____AA__
4._PA_150_[PER]
____CCGGCC__AACCAGCC____AA__
5._PA_150_[PER]
____CCGGCC__AACCAGCC____AA__
6._PA_150_[PER]
____CCGGCC__AACCAGCC____AA__
7._PA_150_[PER]
____CCGGCC__AACCAGCC____AA__
8._EQX_/O_[CHA]
____CCGGCC__CCCCAGCC____AA__
9._GC-03-032-3-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
10._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
11._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
12._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
13._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
14._GC-07-077-4-21
TTCCCCGGCCGGCCCCAGCCGGGGAACC
15._RUQ_32
____CCGGCC__ACCCAGCC____AA__
16._PA_56_[PER]
____CCGGCC__ACCCAGCC____AA__
17._PA_128_[PER]
____ACGGCC__AC__AGCC____AA__
18._RUQ_32
TTCCCCGGCCGGACCCAGCCGGGGAACC
19._PA_56_[PER]
____CCGGCC__AACCAGCC____AA__
20._PA_56_[PER]
____CCGGCC__AACCAGCC____AA__
21._PA_56_[PER]
____CCGGCC__AACCAGCC____AA__
22._PA_56_[PER]
____CCGGCC__AACCAGCC____AA__
23._RUQ_1119
TTCCCCGGCTGGCCCCGGCCGGGGAACC
24._PA_56_[PER]
____CCGGCC__AACCAGCC________
25._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
26._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
27._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
28._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
29._RUQ_1576
TTCCACGGCCGGCCCCGGCCGGGGAACC
30._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
31._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
32._NA
TTCCCCGGCCGGAACCAGCCGGGG__CC
 1516171819202122232425262728
_Input profile
AAACCCGTCGCCCTTTTTGGAGTTAAGG
1._EET_272_[ECU]
AAACCCGTCGCC__TT__GG______GG
2._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
3._EET_272_[ECU]
AAACCCGTCGCC__TT__GG______GG
4._PA_150_[PER]
AAACCCGTCGCC__TT__GG______GG
5._PA_150_[PER]
AAACCCGTCGCC__TT__GG______GG
6._PA_150_[PER]
AAACCCGTCGCC__TT__GG______GG
7._PA_150_[PER]
AAACCCGTCGCC__TT__GG______GG
8._EQX_/O_[CHA]
AAACCCGTCGCC__TT__GG______GG
9._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
10._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
11._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
12._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
13._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
14._GC-07-077-4-21
AAACCCGTCGCCCCTTCTGGAGTTAAGG
15._RUQ_32
AAACCTGTCGCC__TT__GG______GG
16._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
17._PA_128_[PER]
AAAACCGTCGCC__TT__________GG
18._RUQ_32
AAACCTGTCGCCTTTTCTGGAGTTAAGG
19._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
20._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
21._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
22._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
23._RUQ_1119
AGACCTGTGGCCCTTTTTGGAGTTAAGG
24._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
25._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
26._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
27._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
28._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
29._RUQ_1576
AAAACCGGCGCCTTTTCTGGAGTTAAGG
30._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
31._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
32._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
1._EET_272_[ECU]
__CCAG__CC______TT____CCGGGG
2._GC-03-032-3-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
3._EET_272_[ECU]
__CCAG__CC______TT____CCGGGG
4._PA_150_[PER]
__CCAG__CC______TT____CCGGGG
5._PA_150_[PER]
__CCAG__CC______TT____CCGGGG
6._PA_150_[PER]
__CCAG__CC______TT____CCGGGG
7._PA_150_[PER]
__CCAG__CC______TT____CCGGGG
8._EQX_/O_[CHA]
__CC____CC______TT____CCGGGG
9._GC-03-032-3-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
10._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
11._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
12._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
13._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
14._GC-07-077-4-21
CCCC__CCCCGGGGTTTTTTCCCCGGGG
15._RUQ_32
__CCAG__CC______TT____CTCGGG
16._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
17._PA_128_[PER]
CCCCAG__CC______TT____CTGGGG
18._RUQ_32
CCCCAGCCCCGGGGTTTTCTCCCTCGGG
19._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
20._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
21._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
22._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
23._RUQ_1119
CCCCAGCCCCGGGGTTTTCTCCCCGGGG
24._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
25._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
26._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
27._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
28._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
29._RUQ_1576
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
30._RUQ_1642
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
31._RUQ_1642
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
32._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG

Input profile: MOQ_6_/95 RUQ_1436

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_272_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._EET_272_[ECU] GC-03-032-3-11

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

4._PA_150_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

5._PA_150_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

6._PA_150_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

7._PA_150_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._EQX_/O_[CHA]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

9._EET_272_[ECU] GC-03-032-3-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._EQX_/O_[CHA] GC-07-077-4-21

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_56_[PER] RUQ_32

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._PA_56_[PER]

93.8 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

17._PA_128_[PER]

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D272 T2
 Dapeng Zhang, 2014

18._PA_56_[PER] RUQ_32

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._PA_56_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

20._PA_56_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

21._PA_56_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

22._PA_56_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

23._PA_279_[PER] RUQ_1119

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._PA_56_[PER]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

25._PA_56_[PER] NA

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._PA_56_[PER] NA

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._PA_56_[PER] NA

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

28._PA_56_[PER] NA

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

29._PA_124_[PER] RUQ_1576

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._PA_56_[PER] NA

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484