SNP Profiles matching LZ 8

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 Key

 1234567891011121314
_Input profile
TTCCACGGCCGGAACCAACTAGGGAACC
1._RUQ_6
TTCCACGGCTGGAACCAACTAGGGAACC
2._RUQ_24
TTCCACGGCTGGAACCAACTAGGGAACC
3._RUQ_1534
TTCCACGGCTGGAACCAACTAGGGAACC
4._RUQ_1064
TTCCACGGCCGGAACGAGCTGGGGATCC
5._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
6._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
7._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
8._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
9._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
10._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
11._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
12._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
13._POUND_7_/B
____ACGGCT__AACCAACT____AA__
14._POUND_7_/B
____ACGGCT__AACCAACT____AA__
15._POUND_7_/B
____ACGGCT__AACCAACT____AA__
16._POUND_7_/B
____ACGGCT__AACCAACT____AA__
17._POUND_7_/B
____ACGGCT__AACCAACT____AA__
18._POUND_7_/B
____ACGGCT__AACCAACT____AA__
19._POUND_7_/B
____ACGGCT__AACCAACT____AA__
20._POUND_7_/B
____ACGGCT__AACCAACT____AA__
21._PA_150_[PER]
____ACGGCT__AACCAACT____AA__
22._POUND_7_/B
____ACGGCT__AACCAACT____AA__
23._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
24._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
25._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
26._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
27._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
28._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
29._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
30._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
31._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
32._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
33._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
34._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
35._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
36._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
37._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
38._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
 1516171819202122232425262728
_Input profile
AACCCCGTGGAACCCTTTGGGGTTACCC
1._RUQ_6
AACCCTGTGGAACCCTTTGGGGTTACCC
2._RUQ_24
AACCCTGTGGAACCCTTTGGGGTTACCC
3._RUQ_1534
AACCCTGTGGAACCCTTTGGGGTTACCC
4._RUQ_1064
AACCCCGGGGAACCCTTTGGGGTTACCC
5._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
6._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
7._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
8._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
9._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
10._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
11._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
12._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
13._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
14._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
15._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
16._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
17._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
18._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
19._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
20._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
21._PA_150_[PER]
AACCCTGTGGAA__CT__GG______CC
22._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
23._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
24._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
25._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
26._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
27._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
28._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
29._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
30._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
31._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
32._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
33._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
34._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
35._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
36._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
37._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
38._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
 2930313233343536373839404142
_Input profile
CCTTAGCCCCGGGGTTTTTTCCTTCCAA
1._RUQ_6
CCTTAG__CTGGGGTTTTTTCCTTCCAA
2._RUQ_24
CC__AGCCCTGGGGTTTTTTCCTTCCAA
3._RUQ_1534
CCTTAG__CTGGGGTTTTTTCCTTCCAA
4._RUQ_1064
CCTTAGCCCCGGGGTTTTCTCCTTCCAA
5._EET_272_[ECU]
__CTAG__CT______TT____TTCCAA
6._EET_272_[ECU]
__CTAG__CT______TT____TTCCAA
7._EET_272_[ECU]
__CTAG__CT______TT____TTCCAA
8._EET_272_[ECU]
__CTAG__CT______TT____TTCCAA
9._EET_272_[ECU]
__CTAG__CT______TT____TTCCAA
10._EET_272_[ECU]
__CTAG__CT______TT____TTCCAA
11._EET_272_[ECU]
__CTAG__CT______TT____TTCCAA
12._EET_272_[ECU]
__CTAG__CT______TT____TTCCAA
13._POUND_7_/B
__CTAG__CT______TT____TTCCAA
14._POUND_7_/B
__CTAG__CT______TT____TTCCAA
15._POUND_7_/B
__CTAG__CT______TT____TTCCAA
16._POUND_7_/B
__CTAG__CT______TT____TTCCAA
17._POUND_7_/B
__CTAG__CT______TT____TTCCAA
18._POUND_7_/B
__CTAG__CT______TT____TTCCAA
19._POUND_7_/B
__CTAG__CT______TT____TTCCAA
20._POUND_7_/B
__CTAG__CT______TT____TTCCAA
21._PA_150_[PER]
__CTAG__CT______TT____TTCCAA
22._POUND_7_/B
__CTAG__CT______TT____TTCCAA
23._GC-03-032-3-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
24._GC-03-032-3-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
25._GC-03-032-3-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
26._GC-03-032-3-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
27._GC-03-032-3-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
28._GC-03-032-3-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
29._GC-03-032-3-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
30._GC-01-114-6-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
31._GC-01-114-6-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
32._GC-01-114-6-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
33._GC-01-114-6-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
34._GC-01-114-6-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
35._GC-01-114-6-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
36._GC-01-114-6-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
37._GC-01-114-6-11
CCCTAGCTCTGGGGTTTTTTCCTTCCAA
38._GC-03-032-3-11
CCCTAGCTCTGGGGTTTT__CCTTCCAA

Input profile: LZ_8 RUQ_1231

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_272_[ECU] RUQ_6

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._POUND_7_/B RUQ_24

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._TRD_32 RUQ_1534

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._SCA_9 RUQ_1064

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._EET_272_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

6._EET_272_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

7._EET_272_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

8._EET_272_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

9._EET_272_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

10._EET_272_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

11._EET_272_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

12._EET_272_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._POUND_7_/B

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._POUND_7_/B

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

15._POUND_7_/B

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

16._POUND_7_/B

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

17._POUND_7_/B

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

18._POUND_7_/B

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

19._POUND_7_/B

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

20._POUND_7_/B

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

21._PA_150_[PER]

91.7 %
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

22._POUND_7_/B

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

23._EET_272_[ECU] GC-03-032-3-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

24._EET_272_[ECU] GC-03-032-3-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

25._EET_272_[ECU] GC-03-032-3-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

26._EET_272_[ECU] GC-03-032-3-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._EET_272_[ECU] GC-03-032-3-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

28._EET_272_[ECU] GC-03-032-3-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

29._EET_272_[ECU] GC-03-032-3-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

30._POUND_7_/B GC-01-114-6-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

31._POUND_7_/B GC-01-114-6-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

32._POUND_7_/B GC-01-114-6-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

33._POUND_7_/B GC-01-114-6-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

34._POUND_7_/B GC-01-114-6-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

35._POUND_7_/B GC-01-114-6-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

36._POUND_7_/B GC-01-114-6-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

37._POUND_7_/B GC-01-114-6-11

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

38._EET_272_[ECU] GC-03-032-3-11

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484