SNP Profiles matching LV 20 [POU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGTCTGGACCCAACCGGAGAACC
1._LV_20_[POU]
____CCGTCT__ACCCAACC____AA__
2._LV_20_[POU]
____CCGTCT__ACCCAACC____AA__
3._LV_20_[POU]
____CCGTCT__ACCCAACC____AA__
4._LV_20_[POU]
____CCGTCT__ACCCAACC____AA__
5._RUQ_354
____CCGTCT__ACCCAACC____AA__
6._LV_20_[POU]
____CCGTCT__ACCCAACC____AA__
7._LV_20_[POU]
____CCGTCT__ACCCAACC____AA__
8._GC-04-027-2-09
TTCCCCGTCTGGACCCAACCGGAGAACC
9._GC-04-027-2-09
TTCCCCGTCTGGACCCAACCGGAGAACC
10._GC-04-027-2-09
TTCCCCGTCTGGACCCAACCGGAGAACC
11._GC-04-027-2-09
TTCCCCGTCTGGACCCAACCGGAGAACC
12._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
13._RUQ_1539
TTCCCCGTCTGGACCCAACCAGAGATCC
14._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
15._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
16._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
17._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
18._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
19._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
20._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
21._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
22._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
23._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
24._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
25._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
26._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
27._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
28._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
29._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
30._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
31._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
32._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
33._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
34._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
35._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
36._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
37._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
38._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
39._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
40._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
41._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
42._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
43._RUQ_414
____CCGTCT__ACCCAACC____AT__
44._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
45._EET_95_[ECU]
____CCGTCT__ACCC__CC____AT__
46._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
47._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
48._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
49._EET_95_[ECU]
____CCGTCT__AC__AACC____AT__
50._RUQ_462
TTCCCC__CTGGACCCAACCGGAGATCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGCCTTGTCGCCCTTTCCGTAGTTACGG
1._LV_20_[POU]
AGCCTTGTCGCC__TT__GT______GG
2._LV_20_[POU]
AGCCTTGTCGCC__TT__GT______GG
3._LV_20_[POU]
AGCCTTGTCGCC__TT__GT______GG
4._LV_20_[POU]
AGCCTTGTCGCC__TT__GT______GG
5._RUQ_354
AGCCTTGTCGCC__TT__GT______GG
6._LV_20_[POU]
AGCCTTGTCGCC__TT__GT______GG
7._LV_20_[POU]
AGCCTTGTCGCC__TT__GT______GG
8._GC-04-027-2-09
AGCCTTGTCGCCCTTTCTGTAGTTACGG
9._GC-04-027-2-09
AGCCTTGTCGCCCTTTCTGTAGTTACGG
10._GC-04-027-2-09
AGCCTTGTCGCCCTTTCTGTAGTTACGG
11._GC-04-027-2-09
AGCCTTGTCGCCCTTTCTGTAGTTACGG
12._EET_95_[ECU]
AGAC__GTCGCC__TT__GT______GG
13._RUQ_1539
AGACCTGTCGCCCTTTCTGTAGTTACGG
14._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
15._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
16._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
17._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
18._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
19._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
20._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
21._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
22._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
23._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
24._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
25._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
26._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
27._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
28._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
29._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
30._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
31._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
32._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
33._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
34._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
35._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
36._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
37._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
38._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
39._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
40._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
41._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
42._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
43._RUQ_414
AGACCTGTCGCC__TT__GT______GG
44._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
45._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
46._EET_95_[ECU]
__ACCTGTCGCC__TT__GT______GG
47._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
48._EET_95_[ECU]
AGACCTGTCGCC__TT__GT________
49._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
50._RUQ_462
AAACCTGTCGCCTTTTCCTTAGTTACGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGTTAGTTCCGGAGTTGTTTCTCTCGAG
1._LV_20_[POU]
__CTAG__CC______GT____CTCGAG
2._LV_20_[POU]
__CTAG__CC______GT____CTCGAG
3._LV_20_[POU]
__CTAG__CC______GT____CTCGAG
4._LV_20_[POU]
__CTAG__CC______GT____CTCGAG
5._RUQ_354
__CTAG__CC______GT____CTCGAG
6._LV_20_[POU]
__CTAG__CC______GT____CTCGAG
7._LV_20_[POU]
__CTAG__CC______GT____CTCGAG
8._GC-04-027-2-09
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
9._GC-04-027-2-09
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
10._GC-04-027-2-09
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
11._GC-04-027-2-09
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
12._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
13._RUQ_1539
CGTTAG__CCGGAGTTGTCTCTCTCGAG
14._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
15._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
16._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
17._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
18._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
19._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
20._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
21._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
22._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
23._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
24._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
25._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
26._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
27._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
28._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
29._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
30._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
31._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
32._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
33._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
34._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
35._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
36._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
37._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
38._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
39._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
40._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
41._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
42._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
43._RUQ_414
__CTAG__CC______GT____CTCGAG
44._EET_95_[ECU]
__CTAG__CC____________CTCGAG
45._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
46._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
47._EET_95_[ECU]
__CTAG__CC______GT____CT__AG
48._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
49._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
50._RUQ_462
CGTTAGTTCCGGAGTTGTTTCTCCCGAA

Input profile: LV_20_[POU] RUQ_354

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._LV_20_[POU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 8 > FP
 Dapeng Zhang, 2016

2._LV_20_[POU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 4 > FP
 Dapeng Zhang, 2016

3._LV_20_[POU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 3
 Dapeng Zhang, 2016

4._LV_20_[POU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 1
 Dapeng Zhang, 2016

5._LV_20_[POU] RUQ_354

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._LV_20_[POU]

97.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 562
 Dapeng Zhang, 2016

7._LV_20_[POU]

97.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 563
 Dapeng Zhang, 2016

8._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

11._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

12._EET_95_[ECU]

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 16
 Dapeng Zhang, 2016

13._JA_5_/5_[POU] RUQ_1539

92.7 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 10
 Dapeng Zhang, 2016

15._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 9
 Dapeng Zhang, 2016

16._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 7
 Dapeng Zhang, 2016

17._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 6
 Dapeng Zhang, 2016

18._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 5
 Dapeng Zhang, 2016

19._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 4
 Dapeng Zhang, 2016

20._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 3
 Dapeng Zhang, 2016

21._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 2
 Dapeng Zhang, 2016

22._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 1
 Dapeng Zhang, 2016

23._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 17
 Dapeng Zhang, 2016

24._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 14
 Dapeng Zhang, 2016

25._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 13
 Dapeng Zhang, 2016

26._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 11
 Dapeng Zhang, 2016

27._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 10
 Dapeng Zhang, 2016

28._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 9
 Dapeng Zhang, 2016

29._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 8
 Dapeng Zhang, 2016

30._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 7
 Dapeng Zhang, 2016

31._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 6
 Dapeng Zhang, 2016

32._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 12 > F
 Dapeng Zhang, 2016

33._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 11 > F
 Dapeng Zhang, 2016

34._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 1 > FP
 Dapeng Zhang, 2016

35._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 16
 Dapeng Zhang, 2016

36._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 15
 Dapeng Zhang, 2016

37._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 14
 Dapeng Zhang, 2016

38._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 9
 Dapeng Zhang, 2016

39._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 8
 Dapeng Zhang, 2016

40._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 7
 Dapeng Zhang, 2016

41._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 6
 Dapeng Zhang, 2016

42._EET_95_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 3
 Dapeng Zhang, 2016

43._EET_95_[ECU] RUQ_414

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

44._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8819 8
 Dapeng Zhang, 2016

45._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 15
 Dapeng Zhang, 2016

46._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 12
 Dapeng Zhang, 2016

47._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 2
 Dapeng Zhang, 2016

48._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 5
 Dapeng Zhang, 2016

49._EET_95_[ECU]

91.3 %
23 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria EET 95 CATIE
 Dapeng Zhang, 2016

50._LV_28_[POU] RUQ_462

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484