SNP Profiles matching LCT EEN 261/S4

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	CC	GT	CT	AG	AC	CC	AA	CC	GG	GG	AT	CC
1._COCA_3310_/3_[CHA]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
2._COCA_3310_/3_[CHA]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
3._EET_45_[ECU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AA	__
4._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
5._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
6._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
7._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
8._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
9._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
10._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
11._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
12._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
13._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
14._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
15._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
16._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
17._UF_29	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
18._COCA_3310_/3_[CHA]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
19._EET_95_[ECU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
20._EET_95_[ECU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
21._UF_29	__	__	CC	GT	CT	__	AC	__	AA	CC	__	__	AT	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AC	CT	GT	CG	AC	CC	TT	CT	GG	AG	TT	AC	CG
1._COCA_3310_/3_[CHA]	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
2._COCA_3310_/3_[CHA]	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
3._EET_45_[ECU]	AG	AC	CT	GT	CG	AC	__	TT	__	GG	__	__	__	CG
4._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
5._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
6._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
7._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
8._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
9._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
10._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
11._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
12._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
13._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
14._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
15._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
16._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
17._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
18._COCA_3310_/3_[CHA]	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
19._EET_95_[ECU]	__	AC	CT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
20._EET_95_[ECU]	AG	AC	CT	GT	CG	CC	__	TT	__	GT	__	__	__	__
21._UF_29	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	AA	AG	CC	CC	GT	AA	AT	GT	CT	CT	CT	CG
1._COCA_3310_/3_[CHA]	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
2._COCA_3310_/3_[CHA]	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
3._EET_45_[ECU]	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CC	CG
4._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
5._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
6._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
7._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
8._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
9._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
10._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
11._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
12._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
13._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
14._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
15._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
16._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
17._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
18._COCA_3310_/3_[CHA]	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
19._EET_95_[ECU]	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
20._EET_95_[ECU]	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
21._UF_29	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG

	43
_Input profile	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._COCA_3310_/3_[CHA]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._COCA_3310_/3_[CHA]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._EET_45_[ECU]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._COCA_3310_/3_[CHA]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._EET_95_[ECU]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._EET_95_[ECU]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._UF_29	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_261_/S-4 RUQ_1452

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5230 2 > FP

Dapeng Zhang, 2016

2._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5230 1 > FP

Dapeng Zhang, 2016

3._EET_45_[ECU]

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3206 3 > FP

Dapeng Zhang, 2016

4._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 2

Dapeng Zhang, 2016

5._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 3

Dapeng Zhang, 2016

6._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 7

Dapeng Zhang, 2016

7._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 8

Dapeng Zhang, 2016

8._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 10

Dapeng Zhang, 2016

9._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 12

Dapeng Zhang, 2016

10._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 13

Dapeng Zhang, 2016

11._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 15

Dapeng Zhang, 2016

12._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 16

Dapeng Zhang, 2016

13._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 14 > F

Dapeng Zhang, 2016

14._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 4 > FP

Dapeng Zhang, 2016

15._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 6 > FP

Dapeng Zhang, 2016

16._UF_29

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1115 9 > FP

Dapeng Zhang, 2016

17._UF_29

91.7 %
24 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

18._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E371 T2

Dapeng Zhang, 2016

19._EET_95_[ECU]

91.3 %
23 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8354 12

Dapeng Zhang, 2016

20._EET_95_[ECU]

91.3 %
23 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3106 5

Dapeng Zhang, 2016

21._UF_29

91.3 %
23 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F454 T8

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484

SNP Profiles matching LCT EEN 261/S4

Show/Hide Profiles

Input profile: LCT_EEN_261_/S-4 RUQ_1452

1._COCA_3310_/3_[CHA]

91.7 % 24 shared markers

2._COCA_3310_/3_[CHA]

91.7 % 24 shared markers

3._EET_45_[ECU]

91.7 % 24 shared markers

4._UF_29

91.7 % 24 shared markers

5._UF_29

91.7 % 24 shared markers

6._UF_29

91.7 % 24 shared markers

7._UF_29

91.7 % 24 shared markers

8._UF_29

91.7 % 24 shared markers

9._UF_29

91.7 % 24 shared markers

10._UF_29

91.7 % 24 shared markers

11._UF_29

91.7 % 24 shared markers

12._UF_29

91.7 % 24 shared markers

13._UF_29

91.7 % 24 shared markers

14._UF_29

91.7 % 24 shared markers

15._UF_29

91.7 % 24 shared markers

16._UF_29

91.7 % 24 shared markers

17._UF_29

91.7 % 24 shared markers

18._COCA_3310_/3_[CHA]

91.7 % 24 shared markers

19._EET_95_[ECU]

91.3 % 23 shared markers

20._EET_95_[ECU]

91.3 % 23 shared markers

21._UF_29

91.3 % 23 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

91.3 %
23 shared markers

91.3 %
23 shared markers

91.3 %
23 shared markers