SNP Profiles matching UF 29

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTCCCCGTCTAGACCCAACCGGGGATCC
1._COCA_3310_/3_[CHA]___
____CCGTCT__ACCCAACC____AT__
2._COCA_3310_/3_[CHA]___
____CCGTCT__ACCCAACC____AT__
3._EET_45_[ECU]___
____CCGTCT__ACCCAACC____AA__
4._UF_29___
____CCGTCT__ACCCAACC____AT__
5._UF_29___
____CCGTCT__ACCCAACC____AT__
6._UF_29___
____CCGTCT__ACCCAACC____AT__
7._UF_29___
____CCGTCT__ACCCAACC____AT__
8._UF_29___
____CCGTCT__ACCCAACC____AT__
9._UF_29___
____CCGTCT__ACCCAACC____AT__
10._UF_29___
____CCGTCT__ACCCAACC____AT__
11._UF_29___
____CCGTCT__ACCCAACC____AT__
12._UF_29___
____CCGTCT__ACCCAACC____AT__
13._UF_29___
____CCGTCT__ACCCAACC____AT__
14._UF_29___
____CCGTCT__ACCCAACC____AT__
15._UF_29___
____CCGTCT__ACCCAACC____AT__
16._UF_29___
____CCGTCT__ACCCAACC____AT__
17._UF_29___
____CCGTCT__ACCCAACC____AT__
18._COCA_3310_/3_[CHA]___
____CCGTCT__ACCCAACC____AT__
19._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
20._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
21._UF_29___
____CCGTCT__AC__AACC____AT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGACCTGTCGACCCTTCTGGAGTTACCG
1._COCA_3310_/3_[CHA]___
AGACCTGTCGAC__CT__GG______GG
2._COCA_3310_/3_[CHA]___
AGACCTGTCGAC__CT__GG______GG
3._EET_45_[ECU]___
AGACCTGTCGAC__TT__GG______CG
4._UF_29___
AGACCTGTCGAC__CT__GG______GG
5._UF_29___
AGACCTGTCGAC__CT__GG______GG
6._UF_29___
AGACCTGTCGAC__CT__GG______GG
7._UF_29___
AGACCTGTCGAC__CT__GG______GG
8._UF_29___
AGACCTGTCGAC__CT__GG______GG
9._UF_29___
AGACCTGTCGAC__CT__GG______GG
10._UF_29___
AGACCTGTCGAC__CT__GG______GG
11._UF_29___
AGACCTGTCGAC__CT__GG______GG
12._UF_29___
AGACCTGTCGAC__CT__GG______GG
13._UF_29___
AGACCTGTCGAC__CT__GG______GG
14._UF_29___
AGACCTGTCGAC__CT__GG______GG
15._UF_29___
AGACCTGTCGAC__CT__GG______GG
16._UF_29___
AGACCTGTCGAC__CT__GG______GG
17._UF_29___
AGACCTGTCGAC__CT__GG______GG
18._COCA_3310_/3_[CHA]___
AGACCTGTCGAC__CT__GG______GG
19._EET_95_[ECU]___
__ACCTGTCGCC__TT__GT______GG
20._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT________
21._UF_29___
AGACCTGTCGAC__CT__GG______GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTAAAGCCCCGTAAATGTCTCTCTCG
1._COCA_3310_/3_[CHA]___
__CT__AG__CC______GT____CTCG
2._COCA_3310_/3_[CHA]___
__CT__AG__CC______GT____CTCG
3._EET_45_[ECU]___
__CT__AG__CC______GT____CCCG
4._UF_29___
__CT__AG__CC______GT____CTCG
5._UF_29___
__CT__AG__CC______GT____CTCG
6._UF_29___
__CT__AG__CC______GT____CTCG
7._UF_29___
__CT__AG__CC______GT____CTCG
8._UF_29___
__CT__AG__CC______GT____CTCG
9._UF_29___
__CT__AG__CC______GT____CTCG
10._UF_29___
__CT__AG__CC______GT____CTCG
11._UF_29___
__CT__AG__CC______GT____CTCG
12._UF_29___
__CT__AG__CC______GT____CTCG
13._UF_29___
__CT__AG__CC______GT____CTCG
14._UF_29___
__CT__AG__CC______GT____CTCG
15._UF_29___
__CT__AG__CC______GT____CTCG
16._UF_29___
__CT__AG__CC______GT____CTCG
17._UF_29___
__CT__AG__CC______GT____CTCG
18._COCA_3310_/3_[CHA]___
__CT__AG__CC______GT____CTCG
19._EET_95_[ECU]___
__CT__AG__CC______GT____CTCG
20._EET_95_[ECU]___
__CT__AG__CC______GT____CTCG
21._UF_29___
__CT__AG__CC______GT____CTCG
 43              
_Input profile
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._COCA_3310_/3_[CHA]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._COCA_3310_/3_[CHA]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._EET_45_[ECU]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._COCA_3310_/3_[CHA]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._EET_95_[ECU]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._EET_95_[ECU]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._UF_29___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_261_/S-4 RUQ_1452

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5230 2 > FP
 Dapeng Zhang, 2016

2._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5230 1 > FP
 Dapeng Zhang, 2016

3._EET_45_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 3 > FP
 Dapeng Zhang, 2016

4._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016

5._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

6._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

7._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

8._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

9._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

10._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

11._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

12._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

13._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

14._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

15._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

16._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

17._UF_29

91.7 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

18._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E371 T2
 Dapeng Zhang, 2016

19._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 12
 Dapeng Zhang, 2016

20._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3106 5
 Dapeng Zhang, 2016

21._UF_29

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484