SNP Profiles matching JA 5/25 [POU]

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 Key

 1234567891011121314
_Input profile
TTACCCGTCTGGACCGAACCGGGGATCC
1._RUQ_456
TTACCCGTCTGGACCGAACCGGGGATCC
2._EET_94_[ECU]
____CCGTCT__ACCGAACC____AT__
3._EET_94_[ECU]
____CCGTCT__ACCGAACC____AT__
4._EET_94_[ECU]
____CCGTCT__ACCGAACC____AT__
5._EET_94_[ECU]
____CCGTCT__ACCGAACC____AT__
6._EET_94_[ECU]
____CCGTCT__ACCGAACC____AT__
7._EET_94_[ECU]
____CCGTCT__ACCGAACC____AT__
8._JA_4_/7_[POU]
____CCGTCT__ACCCAACC____AT__
9._JA_4_/7_[POU]
____CCGTCT__ACCCAACC____AT__
10._JA_4_/7_[POU]
____CCGTCT__ACCCAACC____AT__
11._JA_4_/7_[POU]
____CCGTCT__ACCCAACC____AT__
12._JA_4_/7_[POU]
____CCGTCT__ACCCAACC____AT__
13._JA_6_/2_[POU]
____CCGTCT__CCCGAACC____AT__
14._C_SUL_7
____CCGTCT__CCCGAACC____AT__
15._EET_58_[ECU]
____CCGTCT__CCCGAACC____AT__
16._RUQ_791
TTACCCGTCTGGCCCGAACCGGGGATCC
17._RUQ_845
TTACCCGTCTGGCCCGAACCGGGGATCC
18._EET_95_[ECU]
____CCGTCT__ACCCAACC____AT__
19._EET_95_[ECU]
____CCGTCT__AC__AACC____AT__
20._MARPER_18
____CCGTCT__AC__AACC____AT__
21._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
22._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
23._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
24._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
25._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
 1516171819202122232425262728
_Input profile
AAACCTGTGGCCCTTTTTGGAGTTCCGG
1._RUQ_456
AAACCTGTGGCCCTTTTTGGAGTTCCGG
2._EET_94_[ECU]
AGACCTGTCGCC__TT__GG______GG
3._EET_94_[ECU]
AGACCTGTCGCC__TT__GG______GG
4._EET_94_[ECU]
AGACCTGTCGCC__TT__GG______GG
5._EET_94_[ECU]
AGACCTGTCGCC__TT__GG______GG
6._EET_94_[ECU]
AGACCTGTCGCC__TT__GG______GG
7._EET_94_[ECU]
AGACCTGTCGCC__TT__GG______GG
8._JA_4_/7_[POU]
AGACCTGTCGCC__CT__GG______GG
9._JA_4_/7_[POU]
AGACCTGTCGCC__CT__GG______GG
10._JA_4_/7_[POU]
AGACCTGTCGCC__CT__GG______GG
11._JA_4_/7_[POU]
AGACCTGTCGCC__CT__GG______GG
12._JA_4_/7_[POU]
AGACCTGTCGCC__CT__GG______GG
13._JA_6_/2_[POU]
AGACCTGTCGCC__TT__GG______GG
14._C_SUL_7
AGACCTGTCGCC__TT__GG______GG
15._EET_58_[ECU]
AGACCTGTCGCC__TT__GG______GG
16._RUQ_791
AGACCTGTGGCCCTTTTTGGAGTTACGG
17._RUQ_845
AGACCTGTGGCCCTTTTTGGAGTTACGG
18._EET_95_[ECU]
__ACCTGTCGCC__TT__GT______GG
19._EET_95_[ECU]
AGACCTGTCGCC__TT__GT______GG
20._MARPER_18
AGACCTGTCGCC__CT__GG______GG
21._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
22._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
23._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
24._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
25._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
 2930313233343536373839404142
_Input profile
CGCTAACCCCGTAGTTGTTTCTCTCGAG
1._RUQ_456
CGCTAACCCCGTAGTTGTTTCTCTCGAG
2._EET_94_[ECU]
__CTAG__CC______GT____CTCGAG
3._EET_94_[ECU]
__CTAG__CC______GT____CTCGAG
4._EET_94_[ECU]
__CTAG__CC______GT____CTCGAG
5._EET_94_[ECU]
__CTAG__CC______GT____CTCGAG
6._EET_94_[ECU]
__CTAG__CC______GT____CTCGAG
7._EET_94_[ECU]
__CTAG__CC______GT____CTCGAG
8._JA_4_/7_[POU]
__CTAA__CC______GT____CTCGAG
9._JA_4_/7_[POU]
__CTAA__CC______GT____CTCGAG
10._JA_4_/7_[POU]
__CTAA__CC______GT____CTCGAG
11._JA_4_/7_[POU]
__CTAA__CC______GT____CTCGAG
12._JA_4_/7_[POU]
__CTAA__CC______GT____CTCGAG
13._JA_6_/2_[POU]
__CTAG__CC______GT____CTCGAG
14._C_SUL_7
__CTAG__CC______GT____CTCGAG
15._EET_58_[ECU]
__CTAG__CC______GT____CTCGAG
16._RUQ_791
CGCTAGCCCCGTAGATGTCTCCCTCGAG
17._RUQ_845
CGCTAGCCCCGTAGATGTCTCCCTCGAG
18._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
19._EET_95_[ECU]
__CTAG__CC______GT____CTCGAG
20._MARPER_18
GGCTAA__CC______GT____CTCG__
21._GC-08-147-3-46
CGCTAGCTCCGTAGATGTTTCTCTCGAG
22._GC-08-147-3-46
CGCTAGCTCCGTAGATGTTTCTCTCGAG
23._GC-08-147-3-46
CGCTAGCTCCGTAGATGTTTCTCTCGAG
24._GC-08-147-3-46
CGCTAGCTCCGTAGATGTTTCTCTCGAG
25._GC-08-147-3-46
CGCTAGCTCCGTAGATGT__CTCTCGAG

Input profile: JA_5_/25_[POU] RUQ_838

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._JA_10_/12_[POU] RUQ_456

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 9
 Dapeng Zhang, 2016

3._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 8
 Dapeng Zhang, 2016

4._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 7
 Dapeng Zhang, 2016

5._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 6
 Dapeng Zhang, 2016

6._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._EET_94_[ECU]

93.8 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

8._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 7
 Dapeng Zhang, 2016

9._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 6
 Dapeng Zhang, 2016

10._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 5
 Dapeng Zhang, 2016

11._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 3
 Dapeng Zhang, 2016

12._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._JA_6_/2_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 12
 Dapeng Zhang, 2016

14._C_SUL_7

91.7 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._EET_58_[ECU]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

16._EET_59_[ECU] RUQ_791

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_59_[ECU] RUQ_845

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 12
 Dapeng Zhang, 2016

19._EET_95_[ECU]

91.3 %
23 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria EET 95 CATIE
 Dapeng Zhang, 2016

20._MARPER_18

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 11
 Dapeng Zhang, 2014

21._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._EET_94_[ECU] GC-08-147-3-46

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484