SNP Profiles matching JA 5 /25 [POU]

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 Key

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_Input profile
TTACCCGTCTGGACCGAACCGGGGATCC
1._RUQ_456
TTACCCGTCTGGACCGAACCGGGGATCC
2._EET_94_[ECU]
__CCGTCT_ACCGAACC__AT_
3._EET_94_[ECU]
__CCGTCT_ACCGAACC__AT_
4._EET_94_[ECU]
__CCGTCT_ACCGAACC__AT_
5._EET_94_[ECU]
__CCGTCT_ACCGAACC__AT_
6._EET_94_[ECU]
__CCGTCT_ACCGAACC__AT_
7._EET_94_[ECU]
__CCGTCT_ACCGAACC__AT_
8._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
9._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
10._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
11._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
12._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
13._JA_6_/2_[POU]
__CCGTCT_CCCGAACC__AT_
14._C_SUL_7
__CCGTCT_CCCGAACC__AT_
15._EET_58_[ECU]
__CCGTCT_CCCGAACC__AT_
16._RUQ_791
TTACCCGTCTGGCCCGAACCGGGGATCC
17._RUQ_845
TTACCCGTCTGGCCCGAACCGGGGATCC
18._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
19._EET_95_[ECU]
__CCGTCT_AC_AACC__AT_
20._MARPER_18
__CCGTCT_AC-AACC__AT_
21._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
22._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
23._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
24._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
25._GC-08-147-3-46
TTACCCGTCTGGACCGAACCGGAGATCC
 1516171819202122232425262728
_Input profile
AAACCTGTGGCCCTTTTTGGAGTTCCGG
1._RUQ_456
AAACCTGTGGCCCTTTTTGGAGTTCCGG
2._EET_94_[ECU]
AGACCTGTCGCC_TT_GG___GG
3._EET_94_[ECU]
AGACCTGTCGCC_TT_GG___GG
4._EET_94_[ECU]
AGACCTGTCGCC_TT_GG___GG
5._EET_94_[ECU]
AGACCTGTCGCC_TT_GG___GG
6._EET_94_[ECU]
AGACCTGTCGCC_TT_GG___GG
7._EET_94_[ECU]
AGACCTGTCGCC_TT_GG___GG
8._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
9._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
10._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
11._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
12._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
13._JA_6_/2_[POU]
AGACCTGTCGCC_TT_GG___GG
14._C_SUL_7
AGACCTGTCGCC_TT_GG___GG
15._EET_58_[ECU]
AGACCTGTCGCC_TT_GG___GG
16._RUQ_791
AGACCTGTGGCCCTTTTTGGAGTTACGG
17._RUQ_845
AGACCTGTGGCCCTTTTTGGAGTTACGG
18._EET_95_[ECU]
_ACCTGTCGCC_TT_GT___GG
19._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
20._MARPER_18
AGACCTGTCGCC_CT_GG___GG
21._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
22._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
23._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
24._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
25._GC-08-147-3-46
AGACCTGTCGCCCTTTCTGGAGTTACGG
 2930313233343536373839404142
_Input profile
CGCTAACCCCGTAGTTGTTTCTCTCGAG
1._RUQ_456
CGCTAACCCCGTAGTTGTTTCTCTCGAG
2._EET_94_[ECU]
_CTAG_CC___GT__CTCGAG
3._EET_94_[ECU]
_CTAG_CC___GT__CTCGAG
4._EET_94_[ECU]
_CTAG_CC___GT__CTCGAG
5._EET_94_[ECU]
_CTAG_CC___GT__CTCGAG
6._EET_94_[ECU]
_CTAG_CC___GT__CTCGAG
7._EET_94_[ECU]
_CTAG_CC___GT__CTCGAG
8._JA_4_/7_[POU]
_CTAA_CC___GT__CTCGAG
9._JA_4_/7_[POU]
_CTAA_CC___GT__CTCGAG
10._JA_4_/7_[POU]
_CTAA_CC___GT__CTCGAG
11._JA_4_/7_[POU]
_CTAA_CC___GT__CTCGAG
12._JA_4_/7_[POU]
_CTAA_CC___GT__CTCGAG
13._JA_6_/2_[POU]
_CTAG_CC___GT__CTCGAG
14._C_SUL_7
_CTAG_CC___GT__CTCGAG
15._EET_58_[ECU]
_CTAG_CC___GT__CTCGAG
16._RUQ_791
CGCTAGCCCCGTAGATGTCTCCCTCGAG
17._RUQ_845
CGCTAGCCCCGTAGATGTCTCCCTCGAG
18._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
19._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
20._MARPER_18
GGCTAA_CC___GT__CTCG-
21._GC-08-147-3-46
CGCTAGCTCCGTAGATGTTTCTCTCGAG
22._GC-08-147-3-46
CGCTAGCTCCGTAGATGTTTCTCTCGAG
23._GC-08-147-3-46
CGCTAGCTCCGTAGATGTTTCTCTCGAG
24._GC-08-147-3-46
CGCTAGCTCCGTAGATGTTTCTCTCGAG
25._GC-08-147-3-46
CGCTAGCTCCGTAGATGT_CTCTCGAG

Input profile: JA_5_/25_[POU] RUQ_838

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._JA_10_/12_[POU] RUQ_456

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 9
 Dapeng Zhang, 2016

3._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 8
 Dapeng Zhang, 2016

4._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 7
 Dapeng Zhang, 2016

5._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 6
 Dapeng Zhang, 2016

6._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._EET_94_[ECU]

93.8 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

8._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 7
 Dapeng Zhang, 2016

9._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 6
 Dapeng Zhang, 2016

10._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 5
 Dapeng Zhang, 2016

11._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 3
 Dapeng Zhang, 2016

12._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._JA_6_/2_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 12
 Dapeng Zhang, 2016

14._C_SUL_7

91.7 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._EET_58_[ECU]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

16._EET_59_[ECU] RUQ_791

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_59_[ECU] RUQ_845

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 12
 Dapeng Zhang, 2016

19._EET_95_[ECU]

91.3 %
23 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria EET 95 CATIE
 Dapeng Zhang, 2016

20._MARPER_18

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 11
 Dapeng Zhang, 2014

21._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._EET_94_[ECU] GC-08-147-3-46

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484