SNP Profiles matching JA 10 /12 [POU]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AC	CC	GT	CT	GG	AC	CG	AA	CC	GG	GG	AT	CC
1._RUQ_838	TT	AC	CC	GT	CT	GG	AC	CG	AA	CC	GG	GG	AT	CC
2._EET_94_[ECU]	__	__	CC	GT	CT	__	AC	CG	AA	CC	__	__	AT	__
3._EET_94_[ECU]	__	__	CC	GT	CT	__	AC	CG	AA	CC	__	__	AT	__
4._EET_94_[ECU]	__	__	CC	GT	CT	__	AC	CG	AA	CC	__	__	AT	__
5._EET_94_[ECU]	__	__	CC	GT	CT	__	AC	CG	AA	CC	__	__	AT	__
6._EET_94_[ECU]	__	__	CC	GT	CT	__	AC	CG	AA	CC	__	__	AT	__
7._EET_94_[ECU]	__	__	CC	GT	CT	__	AC	CG	AA	CC	__	__	AT	__
8._JA_4_/7_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
9._JA_4_/7_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
10._JA_4_/7_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
11._JA_4_/7_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
12._JA_4_/7_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
13._JA_6_/2_[POU]	__	__	CC	GT	CT	__	CC	CG	AA	CC	__	__	AT	__
14._C_SUL_7	__	__	CC	GT	CT	__	CC	CG	AA	CC	__	__	AT	__
15._EET_58_[ECU]	__	__	CC	GT	CT	__	CC	CG	AA	CC	__	__	AT	__
16._RUQ_791	TT	AC	CC	GT	CT	GG	CC	CG	AA	CC	GG	GG	AT	CC
17._RUQ_845	TT	AC	CC	GT	CT	GG	CC	CG	AA	CC	GG	GG	AT	CC
18._EET_95_[ECU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
19._EET_95_[ECU]	__	__	CC	GT	CT	__	AC	__	AA	CC	__	__	AT	__
20._MARPER_18	__	__	CC	GT	CT	__	AC	__	AA	CC	__	__	AT	__
21._GC-08-147-3-46	TT	AC	CC	GT	CT	GG	AC	CG	AA	CC	GG	AG	AT	CC
22._GC-08-147-3-46	TT	AC	CC	GT	CT	GG	AC	CG	AA	CC	GG	AG	AT	CC
23._GC-08-147-3-46	TT	AC	CC	GT	CT	GG	AC	CG	AA	CC	GG	AG	AT	CC
24._GC-08-147-3-46	TT	AC	CC	GT	CT	GG	AC	CG	AA	CC	GG	AG	AT	CC
25._GC-08-147-3-46	TT	AC	CC	GT	CT	GG	AC	CG	AA	CC	GG	AG	AT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CT	GT	GG	CC	CT	TT	TT	GG	AG	TT	CC	GG
1._RUQ_838	AA	AC	CT	GT	GG	CC	CT	TT	TT	GG	AG	TT	CC	GG
2._EET_94_[ECU]	AG	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
3._EET_94_[ECU]	AG	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
4._EET_94_[ECU]	AG	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
5._EET_94_[ECU]	AG	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
6._EET_94_[ECU]	AG	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
7._EET_94_[ECU]	AG	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
8._JA_4_/7_[POU]	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
9._JA_4_/7_[POU]	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
10._JA_4_/7_[POU]	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
11._JA_4_/7_[POU]	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
12._JA_4_/7_[POU]	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
13._JA_6_/2_[POU]	AG	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
14._C_SUL_7	AG	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
15._EET_58_[ECU]	AG	AC	CT	GT	CG	CC	__	TT	__	GG	__	__	__	GG
16._RUQ_791	AG	AC	CT	GT	GG	CC	CT	TT	TT	GG	AG	TT	AC	GG
17._RUQ_845	AG	AC	CT	GT	GG	CC	CT	TT	TT	GG	AG	TT	AC	GG
18._EET_95_[ECU]	__	AC	CT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
19._EET_95_[ECU]	AG	AC	CT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
20._MARPER_18	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
21._GC-08-147-3-46	AG	AC	CT	GT	CG	CC	CT	TT	CT	GG	AG	TT	AC	GG
22._GC-08-147-3-46	AG	AC	CT	GT	CG	CC	CT	TT	CT	GG	AG	TT	AC	GG
23._GC-08-147-3-46	AG	AC	CT	GT	CG	CC	CT	TT	CT	GG	AG	TT	AC	GG
24._GC-08-147-3-46	AG	AC	CT	GT	CG	CC	CT	TT	CT	GG	AG	TT	AC	GG
25._GC-08-147-3-46	AG	AC	CT	GT	CG	CC	CT	TT	CT	GG	AG	TT	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CT	AA	CC	CC	GT	AG	TT	GT	TT	CT	CT	CG	AG
1._RUQ_838	CG	CT	AA	CC	CC	GT	AG	TT	GT	TT	CT	CT	CG	AG
2._EET_94_[ECU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
3._EET_94_[ECU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
4._EET_94_[ECU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
5._EET_94_[ECU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
6._EET_94_[ECU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
7._EET_94_[ECU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
8._JA_4_/7_[POU]	__	CT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
9._JA_4_/7_[POU]	__	CT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
10._JA_4_/7_[POU]	__	CT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
11._JA_4_/7_[POU]	__	CT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
12._JA_4_/7_[POU]	__	CT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
13._JA_6_/2_[POU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
14._C_SUL_7	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
15._EET_58_[ECU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
16._RUQ_791	CG	CT	AG	CC	CC	GT	AG	AT	GT	CT	CC	CT	CG	AG
17._RUQ_845	CG	CT	AG	CC	CC	GT	AG	AT	GT	CT	CC	CT	CG	AG
18._EET_95_[ECU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
19._EET_95_[ECU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
20._MARPER_18	GG	CT	AA	__	CC	__	__	__	GT	__	__	CT	CG	__
21._GC-08-147-3-46	CG	CT	AG	CT	CC	GT	AG	AT	GT	TT	CT	CT	CG	AG
22._GC-08-147-3-46	CG	CT	AG	CT	CC	GT	AG	AT	GT	TT	CT	CT	CG	AG
23._GC-08-147-3-46	CG	CT	AG	CT	CC	GT	AG	AT	GT	TT	CT	CT	CG	AG
24._GC-08-147-3-46	CG	CT	AG	CT	CC	GT	AG	AT	GT	TT	CT	CT	CG	AG
25._GC-08-147-3-46	CG	CT	AG	CT	CC	GT	AG	AT	GT	__	CT	CT	CG	AG

Input profile: JA_10_/12_[POU] RUQ_456

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._JA_5_/25_[POU] RUQ_838

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._EET_94_[ECU]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8346 9

Dapeng Zhang, 2016

3._EET_94_[ECU]

93.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8346 8

Dapeng Zhang, 2016

4._EET_94_[ECU]

93.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8346 7

Dapeng Zhang, 2016

5._EET_94_[ECU]

93.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8346 6

Dapeng Zhang, 2016

6._EET_94_[ECU]

93.8 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8346 3

Dapeng Zhang, 2016

7._EET_94_[ECU]

93.8 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

8._JA_4_/7_[POU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8856 7

Dapeng Zhang, 2016

9._JA_4_/7_[POU]

91.7 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8856 6

Dapeng Zhang, 2016

10._JA_4_/7_[POU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8856 5

Dapeng Zhang, 2016

11._JA_4_/7_[POU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8856 3

Dapeng Zhang, 2016

12._JA_4_/7_[POU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8856 1

Dapeng Zhang, 2016

13._JA_6_/2_[POU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 12

Dapeng Zhang, 2016

14._C_SUL_7

91.7 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

15._EET_58_[ECU]

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F465 T10

Dapeng Zhang, 2016

16._EET_59_[ECU] RUQ_791

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._EET_59_[ECU] RUQ_845

91.7 %
42 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8354 12

Dapeng Zhang, 2016

19._EET_95_[ECU]

91.3 %
23 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria EET 95 CATIE

Dapeng Zhang, 2016

20._MARPER_18

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 11

Dapeng Zhang, 2014

21._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

22._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

23._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

24._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

25._EET_94_[ECU] GC-08-147-3-46

90.2 %
41 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484