SNP Profiles matching EET 94 [ECU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTACCCGTCTGGACCGAACCGGGGATCC
1._JA_5_/25_[POU]___
TTACCCGTCTGGACCGAACCGGGGATCC
2._EET_94_[ECU]___
____CCGTCT__ACCGAACC____AT__
3._EET_94_[ECU]___
____CCGTCT__ACCGAACC____AT__
4._EET_94_[ECU]___
____CCGTCT__ACCGAACC____AT__
5._EET_94_[ECU]___
____CCGTCT__ACCGAACC____AT__
6._EET_94_[ECU]___
____CCGTCT__ACCGAACC____AT__
7._EET_94_[ECU]___
____CCGTCT__ACCGAACC____AT__
8._JA_4_/7_[POU]___
____CCGTCT__ACCCAACC____AT__
9._JA_4_/7_[POU]___
____CCGTCT__ACCCAACC____AT__
10._JA_4_/7_[POU]___
____CCGTCT__ACCCAACC____AT__
11._JA_4_/7_[POU]___
____CCGTCT__ACCCAACC____AT__
12._JA_4_/7_[POU]___
____CCGTCT__ACCCAACC____AT__
13._JA_6_/2_[POU]___
____CCGTCT__CCCGAACC____AT__
14._C_SUL_7___
____CCGTCT__CCCGAACC____AT__
15._EET_58_[ECU]___
____CCGTCT__CCCGAACC____AT__
16._EET_59_[ECU]___
TTACCCGTCTGGCCCGAACCGGGGATCC
17._EET_59_[ECU]___
TTACCCGTCTGGCCCGAACCGGGGATCC
18._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
19._EET_95_[ECU]___
____CCGTCT__AC__AACC____AT__
20._MARPER_18___
____CCGTCT__AC__AACC____AT__
21._EET_94_[ECU]___
TTACCCGTCTGGACCGAACCGGAGATCC
22._EET_94_[ECU]___
TTACCCGTCTGGACCGAACCGGAGATCC
23._EET_94_[ECU]___
TTACCCGTCTGGACCGAACCGGAGATCC
24._EET_94_[ECU]___
TTACCCGTCTGGACCGAACCGGAGATCC
25._EET_94_[ECU]___
TTACCCGTCTGGACCGAACCGGAGATCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACCTGTGGCCCTTTTTGGAGTTCCGG
1._JA_5_/25_[POU]___
AAACCTGTGGCCCTTTTTGGAGTTCCGG
2._EET_94_[ECU]___
AGACCTGTCGCC__TT__GG______GG
3._EET_94_[ECU]___
AGACCTGTCGCC__TT__GG______GG
4._EET_94_[ECU]___
AGACCTGTCGCC__TT__GG______GG
5._EET_94_[ECU]___
AGACCTGTCGCC__TT__GG______GG
6._EET_94_[ECU]___
AGACCTGTCGCC__TT__GG______GG
7._EET_94_[ECU]___
AGACCTGTCGCC__TT__GG______GG
8._JA_4_/7_[POU]___
AGACCTGTCGCC__CT__GG______GG
9._JA_4_/7_[POU]___
AGACCTGTCGCC__CT__GG______GG
10._JA_4_/7_[POU]___
AGACCTGTCGCC__CT__GG______GG
11._JA_4_/7_[POU]___
AGACCTGTCGCC__CT__GG______GG
12._JA_4_/7_[POU]___
AGACCTGTCGCC__CT__GG______GG
13._JA_6_/2_[POU]___
AGACCTGTCGCC__TT__GG______GG
14._C_SUL_7___
AGACCTGTCGCC__TT__GG______GG
15._EET_58_[ECU]___
AGACCTGTCGCC__TT__GG______GG
16._EET_59_[ECU]___
AGACCTGTGGCCCTTTTTGGAGTTACGG
17._EET_59_[ECU]___
AGACCTGTGGCCCTTTTTGGAGTTACGG
18._EET_95_[ECU]___
__ACCTGTCGCC__TT__GT______GG
19._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
20._MARPER_18___
AGACCTGTCGCC__CT__GG______GG
21._EET_94_[ECU]___
AGACCTGTCGCCCTTTCTGGAGTTACGG
22._EET_94_[ECU]___
AGACCTGTCGCCCTTTCTGGAGTTACGG
23._EET_94_[ECU]___
AGACCTGTCGCCCTTTCTGGAGTTACGG
24._EET_94_[ECU]___
AGACCTGTCGCCCTTTCTGGAGTTACGG
25._EET_94_[ECU]___
AGACCTGTCGCCCTTTCTGGAGTTACGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGCTAACCCCGTAGTTGTTTCTCTCGAG
1._JA_5_/25_[POU]___
CGCTAACCCCGTAGTTGTTTCTCTCGAG
2._EET_94_[ECU]___
__CTAG__CC______GT____CTCGAG
3._EET_94_[ECU]___
__CTAG__CC______GT____CTCGAG
4._EET_94_[ECU]___
__CTAG__CC______GT____CTCGAG
5._EET_94_[ECU]___
__CTAG__CC______GT____CTCGAG
6._EET_94_[ECU]___
__CTAG__CC______GT____CTCGAG
7._EET_94_[ECU]___
__CTAG__CC______GT____CTCGAG
8._JA_4_/7_[POU]___
__CTAA__CC______GT____CTCGAG
9._JA_4_/7_[POU]___
__CTAA__CC______GT____CTCGAG
10._JA_4_/7_[POU]___
__CTAA__CC______GT____CTCGAG
11._JA_4_/7_[POU]___
__CTAA__CC______GT____CTCGAG
12._JA_4_/7_[POU]___
__CTAA__CC______GT____CTCGAG
13._JA_6_/2_[POU]___
__CTAG__CC______GT____CTCGAG
14._C_SUL_7___
__CTAG__CC______GT____CTCGAG
15._EET_58_[ECU]___
__CTAG__CC______GT____CTCGAG
16._EET_59_[ECU]___
CGCTAGCCCCGTAGATGTCTCCCTCGAG
17._EET_59_[ECU]___
CGCTAGCCCCGTAGATGTCTCCCTCGAG
18._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
19._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
20._MARPER_18___
GGCTAA__CC______GT____CTCG__
21._EET_94_[ECU]___
CGCTAGCTCCGTAGATGTTTCTCTCGAG
22._EET_94_[ECU]___
CGCTAGCTCCGTAGATGTTTCTCTCGAG
23._EET_94_[ECU]___
CGCTAGCTCCGTAGATGTTTCTCTCGAG
24._EET_94_[ECU]___
CGCTAGCTCCGTAGATGTTTCTCTCGAG
25._EET_94_[ECU]___
CGCTAGCTCCGTAGATGT__CTCTCGAG

Input profile: JA_10_/12_[POU] RUQ_456

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._JA_5_/25_[POU] RUQ_838

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 9
 Dapeng Zhang, 2016

3._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 8
 Dapeng Zhang, 2016

4._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 7
 Dapeng Zhang, 2016

5._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 6
 Dapeng Zhang, 2016

6._EET_94_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 3
 Dapeng Zhang, 2016

7._EET_94_[ECU]

93.8 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

8._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 7
 Dapeng Zhang, 2016

9._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 6
 Dapeng Zhang, 2016

10._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 5
 Dapeng Zhang, 2016

11._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 3
 Dapeng Zhang, 2016

12._JA_4_/7_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 1
 Dapeng Zhang, 2016

13._JA_6_/2_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 12
 Dapeng Zhang, 2016

14._C_SUL_7

91.7 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._EET_58_[ECU]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

16._EET_59_[ECU] RUQ_791

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_59_[ECU] RUQ_845

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._EET_95_[ECU]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8354 12
 Dapeng Zhang, 2016

19._EET_95_[ECU]

91.3 %
23 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria EET 95 CATIE
 Dapeng Zhang, 2016

20._MARPER_18

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 11
 Dapeng Zhang, 2014

21._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._EET_94_[ECU] GC-08-147-3-46

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._EET_94_[ECU] GC-08-147-3-46

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484