SNP Profiles matching JA 1 /19 [POU]

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 Key

 1234567891011121314
_Input profile
TTCCCCGTCTGGACCCAACCAGGGATCC
1._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
2._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
3._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
4._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
5._JA_4_/7_[POU]
__CCGTCT_ACCCAACC__AT_
6._MARPER_18
__CCGTCT_AC-AACC__AT_
7._GC-08-284-8-56
TTCCCCGTCTGGACCCAACCAGGGATCC
8._GC-08-284-8-56
TTCCCCGTCTGGACCCAACCAGGGATCC
9._RUQ_414
TTCCCCGTCTGGACCCAACCGGGGATCC
10._COCA_3310_/3_[CHA]
__CCGTCT_ACCCAACC__AT_
11._COCA_3310_/3_[CHA]
__CCGTCT_ACCCAACC__AT_
12._UF_29
__CCGTCT_ACCCAACC__AT_
13._UF_29
__CCGTCT_ACCCAACC__AT_
14._UF_29
__CCGTCT_ACCCAACC__AT_
15._UF_29
__CCGTCT_ACCCAACC__AT_
16._UF_29
__CCGTCT_ACCCAACC__AT_
17._UF_29
__CCGTCT_ACCCAACC__AT_
18._UF_29
__CCGTCT_ACCCAACC__AT_
19._UF_29
__CCGTCT_ACCCAACC__AT_
20._UF_29
__CCGTCT_ACCCAACC__AT_
21._UF_29
__CCGTCT_ACCCAACC__AT_
22._UF_29
__CCGTCT_ACCCAACC__AT_
23._UF_29
__CCGTCT_ACCCAACC__AT_
24._UF_29
__CCGTCT_ACCCAACC__AT_
25._UF_29
__CCGTCT_ACCCAACC__AT_
26._COCA_3310_/3_[CHA]
__CCGTCT_ACCCAACC__AT_
27._UF_29
__CCGTCT_AC_AACC__AT_
28._RUQ_1539
TTCCCCGTCTGGACCCAACCAGAGATCC
 1516171819202122232425262728
_Input profile
AGACCTGTGGCCCTCTTTGGAGTTCCGG
1._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
2._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
3._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
4._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
5._JA_4_/7_[POU]
AGACCTGTCGCC_CT_GG___GG
6._MARPER_18
AGACCTGTCGCC_CT_GG___GG
7._GC-08-284-8-56
AGACCTGTCGCCCTCTCTGGAGTTCCGG
8._GC-08-284-8-56
AGACCTGTCGCCCTCTCTGGAGTTCCGG
9._RUQ_414
AGACCTGTGGCCCCTTCTGTAGTTCCGG
10._COCA_3310_/3_[CHA]
AGACCTGTCGAC_CT_GG___GG
11._COCA_3310_/3_[CHA]
AGACCTGTCGAC_CT_GG___GG
12._UF_29
AGACCTGTCGAC_CT_GG___GG
13._UF_29
AGACCTGTCGAC_CT_GG___GG
14._UF_29
AGACCTGTCGAC_CT_GG___GG
15._UF_29
AGACCTGTCGAC_CT_GG___GG
16._UF_29
AGACCTGTCGAC_CT_GG___GG
17._UF_29
AGACCTGTCGAC_CT_GG___GG
18._UF_29
AGACCTGTCGAC_CT_GG___GG
19._UF_29
AGACCTGTCGAC_CT_GG___GG
20._UF_29
AGACCTGTCGAC_CT_GG___GG
21._UF_29
AGACCTGTCGAC_CT_GG___GG
22._UF_29
AGACCTGTCGAC_CT_GG___GG
23._UF_29
AGACCTGTCGAC_CT_GG___GG
24._UF_29
AGACCTGTCGAC_CT_GG___GG
25._UF_29
AGACCTGTCGAC_CT_GG___GG
26._COCA_3310_/3_[CHA]
AGACCTGTCGAC_CT_GG___GG
27._UF_29
AGACCTGTCGAC_CT_GG___GG
28._RUQ_1539
AGACCTGTCGCCCTTTCTGTAGTTACGG
 2930313233343536373839404142
_Input profile
GGTTAAAACCCCGGAGTTGTCTCTCTCG
1._JA_4_/7_[POU]
_CT_AA_CC___GT__CTCG
2._JA_4_/7_[POU]
_CT_AA_CC___GT__CTCG
3._JA_4_/7_[POU]
_CT_AA_CC___GT__CTCG
4._JA_4_/7_[POU]
_CT_AA_CC___GT__CTCG
5._JA_4_/7_[POU]
_CT_AA_CC___GT__CTCG
6._MARPER_18
GGCT_AA_CC___GT__CTCG
7._GC-08-284-8-56
GGCTAGAACTCCGGAGTTGTTTCTCTCG
8._GC-08-284-8-56
GGCTAGAACTCCGGAGTTGTTTCTCTCG
9._RUQ_414
GGTT-AGCCCCGGAGTTGTCTCTCTCG
10._COCA_3310_/3_[CHA]
_CT_AG_CC___GT__CTCG
11._COCA_3310_/3_[CHA]
_CT_AG_CC___GT__CTCG
12._UF_29
_CT_AG_CC___GT__CTCG
13._UF_29
_CT_AG_CC___GT__CTCG
14._UF_29
_CT_AG_CC___GT__CTCG
15._UF_29
_CT_AG_CC___GT__CTCG
16._UF_29
_CT_AG_CC___GT__CTCG
17._UF_29
_CT_AG_CC___GT__CTCG
18._UF_29
_CT_AG_CC___GT__CTCG
19._UF_29
_CT_AG_CC___GT__CTCG
20._UF_29
_CT_AG_CC___GT__CTCG
21._UF_29
_CT_AG_CC___GT__CTCG
22._UF_29
_CT_AG_CC___GT__CTCG
23._UF_29
_CT_AG_CC___GT__CTCG
24._UF_29
_CT_AG_CC___GT__CTCG
25._UF_29
_CT_AG_CC___GT__CTCG
26._COCA_3310_/3_[CHA]
_CT_AG_CC___GT__CTCG
27._UF_29
_CT_AG_CC___GT__CTCG
28._RUQ_1539
CGTT-AG-CCGGAGTTGTCTCTCTCG
 43             
_Input profile
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._JA_4_/7_[POU]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._JA_4_/7_[POU]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._JA_4_/7_[POU]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._JA_4_/7_[POU]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._JA_4_/7_[POU]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._MARPER_18
-X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-08-284-8-56
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-08-284-8-56
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._RUQ_414
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._COCA_3310_/3_[CHA]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._COCA_3310_/3_[CHA]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._COCA_3310_/3_[CHA]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._UF_29
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._RUQ_1539
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: JA_1_/19_[POU] RUQ_352

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._JA_4_/7_[POU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 7
 Dapeng Zhang, 2016

2._JA_4_/7_[POU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 6
 Dapeng Zhang, 2016

3._JA_4_/7_[POU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 5
 Dapeng Zhang, 2016

4._JA_4_/7_[POU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 3
 Dapeng Zhang, 2016

5._JA_4_/7_[POU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._MARPER_18

95.7 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 11
 Dapeng Zhang, 2014

7._JA_4_/7_[POU] GC-08-284-8-56

93 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._JA_4_/7_[POU] GC-08-284-8-56

93 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._EET_95_[ECU] RUQ_414

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5230 2 > FP
 Dapeng Zhang, 2016

11._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5230 1 > FP
 Dapeng Zhang, 2016

12._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

14._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

15._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

16._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

17._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

18._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

19._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

20._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

21._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

22._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

23._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

24._UF_29

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

25._UF_29

91.7 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

26._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E371 T2
 Dapeng Zhang, 2016

27._UF_29

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

28._JA_5_/5_[POU] RUQ_1539

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484