SNP Profiles matching IMC 27

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGAACCAGCCGGGGAACC
1._RUQ_1588
TTCCCCGGCCGGAACCAACCGGGGAACC
2._RUQ_897
TTCCCCGGCCGGAACCAACCGGGGAACC
3._RUQ_1504
TTCCCCGGCCGGAACCAACCGGGGAACC
4._RUQ_1334
TTCCCCGGCCGGAACCAGCCGGGGAACC
5._RUQ_468
TTCCCCGGCCGGAACCAACCGGGGAACC
6._RUQ_877
TTCCCCGGCCGGAACCAACCGGGGAACC
7._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
8._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
9._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
10._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
11._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
12._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
13._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
14._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
15._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
16._RUQ_801
TTCCCCGGCCGGAACCAACCGGGGAACC
17._RUQ_1587
TTCCCCGGCCGGAACCAACCGGGGAACC
18._GC-08-165-4-08
TT__CCGGCCGGAACCAGCCGGGGAACC
19._POUND_2_/A
____CCGGCC__AACCAACC____AA__
20._POUND_2_/A
____CCGGCC__AACCAACC____AA__
21._POUND_2_/A
____CCGGCC__AACCAACC____AA__
22._POUND_2_/A
____CCGGCC__AACCAACC____AA__
23._POUND_2_/A
____CCGGCC__AACCAACC____AA__
24._POUND_2_/A
____CCGGCC__AACCAACC____AA__
25._POUND_5_/C
____CCGGCC__AACCAGCC____AA__
26._POUND_5_/C
____CCGGCC__AACCAGCC____AA__
27._POUND_5_/C
____CCGGCC__AACCAGCC____AA__
28._POUND_5_/C
____CCGGCC__AACCAGCC____AA__
29._POUND_2_/A
____CCGGCC__AA__AACC____AA__
30._POUND_25_/A
____CCGGCC__AA__AACC____AA__
31._POUND_5_/C
____CCGGCC__AA__AGCC____AA__
32._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
33._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
34._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
35._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
36._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
37._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
38._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
39._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
40._GC-01-111-6-08
TTCCACGG__GGAACGAGCTGGGGAACC
41._GC-01-111-6-08
TTCCACGGCTGGAACGAGCTGGGGAACC
42._RUQ_1238
TTCCCCGGCCGGAACGAGCCGGGGAACC
43._RUQ_691
TTCCACGGCTGGACCGAACTGGGGAACC
 1516171819202122232425262728
_Input profile
AACCTTGGGGAACCCCTTGGGGTTCCGG
1._RUQ_1588
AACCTTGGGGAACCCCTTGGGGTTACGG
2._RUQ_897
AACCCTGGGGAACCCCTTGGGGTTCCGG
3._RUQ_1504
AACCTTGGGGAACCCCTTGGGGTTACGG
4._RUQ_1334
AACCTTGGGGAACCCCTTGGGGTTCCCG
5._RUQ_468
AACCCTGGGGAACCCCTTGGGGTTCCGG
6._RUQ_877
AACC__GGGGAACCCCTTGGGGTTCCCG
7._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
8._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
9._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
10._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
11._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
12._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
13._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
14._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
15._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
16._RUQ_801
AACCCCGGGGAACCCCTTGGGGTTCCGG
17._RUQ_1587
AACCCCGGGGAACCCCTTGGGGTTCCGG
18._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
19._POUND_2_/A
AACCTTGGGGAA__CC__GG______GG
20._POUND_2_/A
AACCTTGGGGAA__CC__GG______GG
21._POUND_2_/A
AACCTTGGGGAA__CC__GG______GG
22._POUND_2_/A
AACCTTGGGGAA__CC__GG______GG
23._POUND_2_/A
AACCTTGGGGAA__CC__GG______GG
24._POUND_2_/A
AACCTTGGGGAA__CC__GG______GG
25._POUND_5_/C
AACCCTGGGGAA__CC__GG______GG
26._POUND_5_/C
AACCCTGGGGAA__CC__GG______GG
27._POUND_5_/C
AACCCTGGGGAA__CC__GG______GG
28._POUND_5_/C
AACCCTGGGGAA__CC__GG______GG
29._POUND_2_/A
AACCTTGGGGAA__CC__GG______GG
30._POUND_25_/A
AACCTTGGGGAA__CC__GG______GG
31._POUND_5_/C
AACCCTGGGGAA__CC__GG______GG
32._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
33._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
34._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
35._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
36._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
37._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
38._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
39._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
40._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
41._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
42._RUQ_1238
AACCCTGGGGACCCCCTTGGAGTTCCCG
43._RUQ_691
AACCTTGGGGAACCCCTTGGGGTTCCCG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
1._RUQ_1588
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
2._RUQ_897
CCCCGGCCCCGGGGTTTTTTCCTTCGAA
3._RUQ_1504
CCCCAGCCCCGGGGTTTTTTCCTTCCAA
4._RUQ_1334
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
5._RUQ_468
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
6._RUQ_877
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
7._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
8._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
9._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
10._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
11._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
12._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
13._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
14._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
15._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
16._RUQ_801
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
17._RUQ_1587
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
18._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
19._POUND_2_/A
__CCGG__CC______TT____TTCCAA
20._POUND_2_/A
__CCGG__CC______TT____TTCCAA
21._POUND_2_/A
__CCGG__CC______TT____TTCCAA
22._POUND_2_/A
__CCGG__CC______TT____TTCCAA
23._POUND_2_/A
__CCGG__CC______TT____TTCCAA
24._POUND_2_/A
__CCGG__CC______TT____TTCCAA
25._POUND_5_/C
__CCGG__CC______TT____TTGGAA
26._POUND_5_/C
__CCGG__CC______TT____TTGGAA
27._POUND_5_/C
__CCGG__CC______TT____TTGGAA
28._POUND_5_/C
__CCGG__CC______TT____TTGGAA
29._POUND_2_/A
__CCGG__CC______TT____TTCCAA
30._POUND_25_/A
__CCGG__CC______TT____TTCCAA
31._POUND_5_/C
__CCGG__CC______TT____TTGGAA
32._GC-01-101-5-18
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
33._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
34._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
35._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
36._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
37._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
38._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
39._GC-01-101-5-18
CCCCGGCCCCGGGGTT__TTCCTTGGAA
40._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
41._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
42._RUQ_1238
CCCCAGCCCCGGGGTTGTTTCCTTCCAG
43._RUQ_691
CCCCAGCCCCGGGGTTGTTTCCTTCGAA

Input profile: IMC_27 RUQ_515

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_710 RUQ_1588

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._CRU_70 RUQ_897

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._NA_232 RUQ_1504

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._NA_916 RUQ_1334

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._NA_756 RUQ_468

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._CRU_100 RUQ_877

95.1 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

10._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

11._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

12._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

13._POUND_5_/C GC-08-165-4-08

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._POUND_5_/C GC-08-165-4-08

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._POUND_5_/C GC-08-165-4-08

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

16._NA_149 RUQ_801

94 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._NA_702 RUQ_1587

94 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._POUND_5_/C GC-08-165-4-08

93.9 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._POUND_2_/A

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._POUND_2_/A

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

21._POUND_2_/A

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

22._POUND_2_/A

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

23._POUND_2_/A

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

24._POUND_2_/A

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

25._POUND_5_/C

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

26._POUND_5_/C

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

27._POUND_5_/C

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

28._POUND_5_/C

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

29._POUND_2_/A

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

30._POUND_25_/A

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

31._POUND_5_/C

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

32._NA_286 GC-01-101-5-18

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

33._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

34._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

35._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

36._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

37._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

38._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

39._NA_286 GC-01-101-5-18

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

40._NA_45 GC-01-111-6-08

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

41._NA_45 GC-01-111-6-08

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

42._NA_670 RUQ_1238

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

43._SPA_16_[COL] RUQ_691

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484