SNP Profiles matching ICS 1

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAAAAGTCCAGAACGAGCTAGAAATCG
1._ICS_1___
CTAAAAGTCCAGAACGAGCTAGAAATCG
2._ICS_1___
____AAGTCC__AACGAGCT____AT__
3._ICS_1___
____AAGTCC__AACGAGCT____AT__
4._ICS_1___
____AAGTCC__AACGAGCT____AT__
5._ICS_1___
____AAGTCC__AACGAGCT____AT__
6._ICS_1___
____AAGTCC__AACGAGCT____AT__
7._PA_70_[PER]___
____AAGTCC__AACGAGCT____AT__
8._ICS_1___
____AAGTCC__AACGAGCT____AT__
9._ICS_1___
____AAGTCC__AACGAGCT____AT__
10._ICS_1___
CTAAAAGTCCAGAACGAGCTAGAAATCG
11._ICS_1___
CTAAAAGTCCAGAACGAGCTAGAAATCG
12._ICS_1___
CTAAAAGTCCAGAACGAGCTAGAAATCG
13._ICS_1___
CTAAAAGTCCAGAACGAGCTAGAAATCG
14._ICS_1___
CTAAAAGTCCAGAACGAGCTAGAAATCG
15._PA_70_[PER]___
CTAAAAGTCCAGAACGAGCTAGAAATCG
16._ICS_1___
CTAAAAGTCCAGAACGAGCTAGAAATCG
17._ICS_1___
____AAGTCC__AACGAGCT____AT__
18._ICS_1___
____AAGTCC__AACGAGCT____AT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGCCTTTTCCAACTTTCTGTGGGTACCG
1._ICS_1___
AGCCTTTTCCAACTTTCTGTGGGTACCG
2._ICS_1___
AGCCTTTTCCAC__TT__GT______CG
3._ICS_1___
AGCCTTTTCCAC__TT__GT______CG
4._ICS_1___
AGCCTTTTCCAC__TT__GT______CG
5._ICS_1___
AGCCTTTTCCAC__TT__GT______CG
6._ICS_1___
AGCCTTTTCCAC__TT__GT______CG
7._PA_70_[PER]___
AGCCTTTTCCAC__TT__GT______CG
8._ICS_1___
AGCCTTTT__AC__TT__GT______CG
9._ICS_1___
__CCTTTTCCAC__TT__GT________
10._ICS_1___
AGCCTTTTCCACCTTTCCGTGGGTACCG
11._ICS_1___
AGCCTTTTCCACCTTTCCGTGGGTACCG
12._ICS_1___
AGCCTTTTCCACCTTTCCGTGGGTACCG
13._ICS_1___
AGCCTTTTCCACCTTTCCGTGGGTACCG
14._ICS_1___
AGCCTTTTCCACCTTTCCGTGGGTACCG
15._PA_70_[PER]___
AGCCTTTTCCACCTTTCCGTGGGTACCG
16._ICS_1___
AGCCTTTT__ACCTTTCCGTGGGTACCG
17._ICS_1___
AGCCTTTTCCAC__TT__GT______CG
18._ICS_1___
AGCCCTTTCCAC__CT__GT______CG
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
CGCCAGTTGTAAAATTCTTTCTGGAAX_X
1._ICS_1___
CGCCAGTTGTAAAATTCTTTCTGGAAX_X
2._ICS_1___
__CCAGTT______TT____CTGGAAX_X
3._ICS_1___
__CCAGTT______TT____CTGGAAX_X
4._ICS_1___
__CCAGTT______TT____CTGGAAX_X
5._ICS_1___
__CCAGTT______TT____CTGGAAX_X
6._ICS_1___
__CCAGTT______TT____CTGGAAX_X
7._PA_70_[PER]___
__CCAGTT______TT____CTGGAAX_X
8._ICS_1___
__CCAGTT______TT____CTGGAAX_X
9._ICS_1___
__CCAGTT______TT____CTGGAAX_X
10._ICS_1___
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
11._ICS_1___
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
12._ICS_1___
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
13._ICS_1___
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
14._ICS_1___
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
15._PA_70_[PER]___
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
16._ICS_1___
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
17._ICS_1___
__CCAGTT______TT____CTGGAGX_X
18._ICS_1___
__CCAGTT______TT____CTGGAGX_X

Input profile: ICS_5 RUQ_817

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._ICS_1 RUQ_847

identical
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

3._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

4._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

5._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

6._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016

7._PA_70_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

8._ICS_1

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

9._ICS_1

97.7 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

10._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._PA_70_[PER] GC-04-053-3-17

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

16._ICS_1 NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._ICS_1 RUQ_847

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_1 RUQ_847

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484