SNP Profiles matching GU 221 /H

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 Key

 1234567891011121314
_Input profile
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
1._GC-01-74-4-10
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._GC-01-75-4-11
CCAAAACCAAGGGGCCAAGGGGAAGGAA
3._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
4._GC-08-266-8-38
CCACAGCCAAGGGGCCAAGGGGAAGGAA
5._RUQ_768
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
6._RUQ_1431
CCACAGCCAAGGGGCCAAGGGGAAGGAA
7._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
8._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
9._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
10._RUQ_191
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
11._MITC-000615
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
12._MITC-000578
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
13._RUQ_222
CCAAAACCAAGGGGCCAAGGGGAAGGAA
14._GC-08-052-1-63
CCAAAACCAAGGGGCCAAGGGGAAGGAA
15._RUQ_814
CCACAGCCAAGGGGCCAAGGGGAAGGAA
16._GC-08-268-8-40
CCAAAACCAAGGGGCCAAGGGGAAGGAA
17._RUQ_815
CCAAAACCAAGGGGCCAAGGGGAAGGAA
18._MITC-000403
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
19._GU-156B_Fld#_198_Plt#_2
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
20._RUQ_813
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
21._RUQ_1543
CCACGGCCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
1._GC-01-74-4-10
AAAAAAAG_GGAAGGAAGGCCAGAAAA
2._GC-01-75-4-11
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
3._RUQ_200
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
4._GC-08-266-8-38
AAAAAAAACCGGAAGGAAGGCGAGAAAA
5._RUQ_768
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
6._RUQ_1431
AAAAAAAACCGGAAGGAAGGCGAGAAAA
7._MITC-000612
AAAAAAAACCGGAAGGAAGGCGAGAAAA
8._GC-01-73-4-9
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
9._GC-01-73-4-9
AAAAAAAG_GGAAGGAAGGCCGGAAAA
10._RUQ_191
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
11._MITC-000615
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
12._MITC-000578
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
13._RUQ_222
AAAAAAAACCGGAAGGAAGGCCAGAAAA
14._GC-08-052-1-63
AAAAAAAGCCGGAAGGAAGGCGGGAAAA
15._RUQ_814
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
16._GC-08-268-8-40
AAAAAAAACCGGAAGGAAGGCCGGAAAA
17._RUQ_815
AAAAAAAACCGGAAGGAAGGCCGGAAAA
18._MITC-000403
AAAAAAAACCGGAAGGAAGGGGGGAAAA
19._GU-156B_Fld#_198_Plt#_2
AAAAAAAACCGGAAGGAAGGGGGGAAAA
20._RUQ_813
AAAAAAAGCCGGAAGGAAGGGGGGAAAA
21._RUQ_1543
AAAAAAAG_GGAAGGAAGGCGGGAAAA
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
1._GC-01-74-4-10
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
2._GC-01-75-4-11
GGTTGGAAGGGGGGGGGGCCTTATGGGG
3._RUQ_200
GGTTGGAAGGGGGGGGGGCCTTATGGGG
4._GC-08-266-8-38
GGTTGGAAGGGGGGGGGGCCTTATAGGG
5._RUQ_768
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
6._RUQ_1431
GGTTGGAAGGGGGGGGGGCCTTATAGGG
7._MITC-000612
GGTTGGAAGGGGGGGGGGCCTTATAGGG
8._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
9._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
10._RUQ_191
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
11._MITC-000615
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
12._MITC-000578
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
13._RUQ_222
GGTTGGAAGGGGGGGGGGCCTTATGGGG
14._GC-08-052-1-63
GGTTGGAAGGGGGGGGGGCCTTATGGGG
15._RUQ_814
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
16._GC-08-268-8-40
GGTTGGAAGGGGGGGGGGCCTTATGGGG
17._RUQ_815
GGTTGGAAGGGGGGGGGGCCTTATGGGG
18._MITC-000403
GGTTGGAAGGGGGGGGGGCCTTATGGGG
19._GU-156B_Fld#_198_Plt#_2
GGTTGGAAGGGGGGGGGGCCTTATGGGG
20._RUQ_813
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
21._RUQ_1543
GGTTGGAAGGGGGGGGGGCCTTATAGGG
 4344454647484950515253545556
_Input profile
AAAGGGGGGGTTGGAACCAAGGCCGGCC
1._GC-01-74-4-10
AAAGGGGGGGTTGGAACCAAGGCCGGCC
2._GC-01-75-4-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
3._RUQ_200
AAAAGGGGGGTTGGAACCAAGGCCGGCC
4._GC-08-266-8-38
AAAAGGGGGGTTGGAACCAAGGCCGGCC
5._RUQ_768
AAAAGGGGGGTTGGAACCAAGGCCGGCC
6._RUQ_1431
AAAAGGGGGGTTGGAACCAAGGCCGGCC
7._MITC-000612
AAAAGGGGGGTTGGAACCAAGGCCGGCC
8._GC-01-73-4-9
AAAGGGGGGGTTGGAACCAAGGCCAGCC
9._GC-01-73-4-9
AAAGGGGGGGTTGGAACCAAGGCCAGCC
10._RUQ_191
AAAGGGGGGGTTGGAACCAAGGCCAGCC
11._MITC-000615
AAAGGGGGGGTTGGAACCAAGGCCAGCC
12._MITC-000578
AAAGGGGGGGTTGGAACCAAGGCCAGCC
13._RUQ_222
AAAAGGGGGGTTGGAACCAAGGCCGGCC
14._GC-08-052-1-63
AAAAGGGGGGTTGGAACCAAGGCCGGCC
15._RUQ_814
AAAGGGGGGGTTGGAACCAAGGCCAGCC
16._GC-08-268-8-40
AAAAGGGGGGTTGGAACCAAGGCCGGCC
17._RUQ_815
AAAAGGGGGGTTGGAACCAAGGCCGGCC
18._MITC-000403
AAAGGGGGGGTTGGAACCAAGGCCGGCC
19._GU-156B_Fld#_198_Plt#_2
AAAGGGGGGGTTGGAACCAAGGCCGGCC
20._RUQ_813
AAAAGGGGGGTTGGAACCAAGGCCGGCC
21._RUQ_1543
AAAGGGGGGGTTGGAACCAAGGCCGGCC
 5758596061626364656667686970
_Input profile
CCGGGGGGAGAACCAAAAAAAAAAAACC
1._GC-01-74-4-10
CCGGGGGGAGAACCAAAAAAAAAAAACC
2._GC-01-75-4-11
ACGGGGGGAGAACCAAAAAAAAAAAACC
3._RUQ_200
ACGGGGGGAGAACCAAAAAAAAAAAACC
4._GC-08-266-8-38
ACGGGGGGAGAACCAAAAACAAAAAACC
5._RUQ_768
CCGGGGAGAGAACCAAAACCAAAAAACC
6._RUQ_1431
ACGGGGGGAGAACCAAAAACAAAAAACC
7._MITC-000612
ACGGGGGGAGAACCAAAAACAAAAAACC
8._GC-01-73-4-9
CCGGGGGGGGAACCAAAACCAAAAAACC
9._GC-01-73-4-9
CCGGGGGGGGAACCAAAACCAAAAAACC
10._RUQ_191
CCGGGGGGGGAACCAAAACCAAAAAACC
11._MITC-000615
CCGGGGGGGGAACCAAAACCAAAAAACC
12._MITC-000578
CCGGGGGGGGAACCAAAACCAAAAAACC
13._RUQ_222
CCGGGGGGAGAACCAAAAACAAAAAACC
14._GC-08-052-1-63
CCGGGGGGAGAACCAAAAACAAAAAACC
15._RUQ_814
AAGGGGGGGGAACCAAAAACAAAAAACC
16._GC-08-268-8-40
CCGGGGGGGGAACCAAAAAAAAAAAACC
17._RUQ_815
CCGGGGGGGGAACCAAAAAAAAAAAACC
18._MITC-000403
CCGGGGGGAAAACCAAAACCAAAAAACC
19._GU-156B_Fld#_198_Plt#_2
CCGGGGGGAAAACCAAAACCAAAAAACC
20._RUQ_813
CCGGGGAGAGAACCAAAACCAAAAAACC
21._RUQ_1543
AAGGGGAGAAAACCAAAAACAAAAAACC
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
1._GC-01-74-4-10
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
2._GC-01-75-4-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
3._RUQ_200
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
4._GC-08-266-8-38
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
5._RUQ_768
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
6._RUQ_1431
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
7._MITC-000612
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
8._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
9._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
10._RUQ_191
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
11._MITC-000615
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
12._MITC-000578
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
13._RUQ_222
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
14._GC-08-052-1-63
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
15._RUQ_814
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
16._GC-08-268-8-40
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
17._RUQ_815
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
18._MITC-000403
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
19._GU-156B_Fld#_198_Plt#_2
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
20._RUQ_813
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
21._RUQ_1543
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X

Input profile: GU_221_/H GU_221_H_Fld#_162_Plt#_1

 
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USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

1._GU_221_/H GC-01-74-4-10

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_221_/C GC-01-75-4-11

95.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._GU_221_/C RUQ_200

95.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._GU_241 GC-08-266-8-38

93.9 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._GU_219_/F RUQ_768

93.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._GU_241_/P RUQ_1431

93.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._GU_241_/P MITC-000612

93.9 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

8._GU_144_/C GC-01-73-4-9

93.3 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

9._GU_144_/C GC-01-73-4-9

93.2 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._GU_144_/C RUQ_191

93.3 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

11._GU_144_/C MITC-000615

93.3 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

12._GU_144_/C MITC-000578

93.3 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

13._GU_147_/H RUQ_222

92.7 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

14._GU_335 GC-08-052-1-63

92.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 63, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._GU_243_/H RUQ_814

92.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._GU_310 GC-08-268-8-40

90.9 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_310_/P RUQ_815

90.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._GU_156_B MITC-000403

90.9 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

19._GU_156_B GU-156B_Fld#_198_Plt#_2

90.9 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 198, Tree: 2
 Mars, 2018

20._GU_114_/P RUQ_813

90.2 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

21._GU_183_/G RUQ_1543

90.1 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998