SNP Profiles matching UF 29

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
ACACAGACAAGGAGCCATAGAGAGAAAC
1._UF_666_Fld#_71_Plt#_5
ACACAGACAAGGAGCCATAGAGAGAAAC
2._UF_705_Fld#_76_Plt#_5
ACACAGACAAGGAGCCATAGAGAGAAAC
3._SCR_2_Fld#_112_Plt#_2
ACACAGACAAGGAGCCAAAGAGAGAAAC
4._RUQ_1539
ACACAGACAAGGAGCCATAGAGAGAGAC
5._EET_103_[ECU]_Fld#_124_Plt#_6
ACCCAGACAAGGAGCCATAGAGAGAAAC
6._EET_54_[ECU]_Fld#_139_Plt#_5
ACACAGAAAAGGAGACATAGAGAGAAAC
7._EET_67_[ECU]_Fld#_67_Plt#_5
ACACAGAAAAGGAGACATAGAGAGAAAC
8._RUQ_352
AAACAGAAAAGGAGCCATAGAGAGAAAC
9._EET_64_[ECU]_Fld#_34_Plt#_6
ACACAGACAAGGAGACATAGAGAGAAAC
10._UF_36_Fld#_106_Plt#_5
ACACAGAAAAGGAGCCATAGGGAGAAAC
 1516171819202122232425262728
_Input profile
AAACAGAAGGAGAGCCAGCGAGACAGAG
1._UF_666_Fld#_71_Plt#_5
AAACAGAAGGAGAGCCAGCGAGACAGAG
2._UF_705_Fld#_76_Plt#_5
AAACAGAAGGAGAGCCAGCGAGACAGAG
3._SCR_2_Fld#_112_Plt#_2
AAACAGAGGGAGAGCCAGCGAGACAGAG
4._RUQ_1539
AGACAGAGGGAGAGCCAGCGAGACAGAG
5._EET_103_[ECU]_Fld#_124_Plt#_6
AGACAGAGGGAGAGCCAGCGAGACAGAG
6._EET_54_[ECU]_Fld#_139_Plt#_5
AGACAGAAGGAGAGCCAGCGAGACAGAG
7._EET_67_[ECU]_Fld#_67_Plt#_5
AGACAGAAGGAGAGCCAGCGAGACAGAG
8._RUQ_352
AGACAGAGGGAGAGCCAGCGAGACAGAG
9._EET_64_[ECU]_Fld#_34_Plt#_6
AGACAGAGGGAGAGCCAGCGAGACAGAG
10._UF_36_Fld#_106_Plt#_5
AGACAGAGGGAGAGCCAGCGAGCCAGAG
 2930313233343536373839404142
_Input profile
ATGGACGGAAGGGGCGCCATATGGAGAT
1._UF_666_Fld#_71_Plt#_5
ATGGACGGAAGGGGCGCCATATGGGGAT
2._UF_705_Fld#_76_Plt#_5
ATGGACGGAAGGGGCGCCATATGGGGAT
3._SCR_2_Fld#_112_Plt#_2
TTGGACGGAAGGGGCGCCATATGGAGAT
4._RUQ_1539
TTGGACGGAAGGGGCGCCATATAGAGAT
5._EET_103_[ECU]_Fld#_124_Plt#_6
ATGGACGGAAGGGGCGCCATATGGGGAT
6._EET_54_[ECU]_Fld#_139_Plt#_5
TTGGACCGAAGGGGCGCCATATGGAGAT
7._EET_67_[ECU]_Fld#_67_Plt#_5
TTGGACCGAAGGGGCGCCATATGGAGAT
8._RUQ_352
TTGGACGGAAGGGGCGCCATATAGGGAT
9._EET_64_[ECU]_Fld#_34_Plt#_6
TTGGACCGAAGGGGCGCCATATGGGGAT
10._UF_36_Fld#_106_Plt#_5
ATAGACGGAAGGAGCGCCATATGGGGAT
 4344454647484950515253545556
_Input profile
AGAGAGAGATGGAGACACAGACAGCGAC
1._UF_666_Fld#_71_Plt#_5
AGAGAGAGATGGAGACACAGACAGCGAC
2._UF_705_Fld#_76_Plt#_5
AGAGAGAGATGGAGACACAGACAGCGAC
3._SCR_2_Fld#_112_Plt#_2
AGAGAGAGATGGAGACACAGACAGCGAC
4._RUQ_1539
AGAGAGAGAAGGAGACACAGACAGCGCC
5._EET_103_[ECU]_Fld#_124_Plt#_6
AGAGAGGGAAGGAGACACAGACAGCGCC
6._EET_54_[ECU]_Fld#_139_Plt#_5
AGAAAGAGAAGGAGACACAGACAGCGCC
7._EET_67_[ECU]_Fld#_67_Plt#_5
AGAAAGAGAAGGAGACACAGACAGCGCC
8._RUQ_352
AGAGAGAGAAGGAGACACAGACAGCGCC
9._EET_64_[ECU]_Fld#_34_Plt#_6
AGAGAGGGAAGGAGACACAGACAGCGCC
10._UF_36_Fld#_106_Plt#_5
AGAGAGAGAAGGAGACACAGACAGCGCC
 5758596061626364656667686970
_Input profile
GGGGAGAGAACCAGAAAAAAAAACCGAG
1._UF_666_Fld#_71_Plt#_5
GGGGAAAGAACCAGAAAAAAAAACCGAG
2._UF_705_Fld#_76_Plt#_5
GGGGAAAGAACCAGAAAAAAAAACCGAG
3._SCR_2_Fld#_112_Plt#_2
GGGGAGAGAACCAGAAAAAAAAACCGAG
4._RUQ_1539
GGAGAAAGAAACAGAAAAAAAAACCGAA
5._EET_103_[ECU]_Fld#_124_Plt#_6
GGGGAAAGAAACAGAAAAAAAACCCGAG
6._EET_54_[ECU]_Fld#_139_Plt#_5
GGAGAAAGAACCAGAAAAAAAAACCGAG
7._EET_67_[ECU]_Fld#_67_Plt#_5
GGAGAAAGAACCAGAAAAAAAAACCGAG
8._RUQ_352
GGAGAGAGAGCCAGAAAAAAAACCCGAG
9._EET_64_[ECU]_Fld#_34_Plt#_6
GGAGAAAGAACCAGAAAAAAAAACCGAG
10._UF_36_Fld#_106_Plt#_5
GGAGAAAGAAACAGAAAAAAAAACCGAG
 7172737475767778798081   
_Input profile
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
1._UF_666_Fld#_71_Plt#_5
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
2._UF_705_Fld#_76_Plt#_5
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
3._SCR_2_Fld#_112_Plt#_2
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
4._RUQ_1539
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
5._EET_103_[ECU]_Fld#_124_Plt#_6
CCAGCGAGCCAAGGAGATAAAGX_XX_XX_X
6._EET_54_[ECU]_Fld#_139_Plt#_5
CCAGCGAGACAGGGAGATAAAGX_XX_XX_X
7._EET_67_[ECU]_Fld#_67_Plt#_5
CCAGCGAGACAGGGAGATAAAGX_XX_XX_X
8._RUQ_352
CCAGCGAGCCAGGGGGATAAAAX_XX_XX_X
9._EET_64_[ECU]_Fld#_34_Plt#_6
CCAGCGAGACAGGGAGATAAAGX_XX_XX_X
10._UF_36_Fld#_106_Plt#_5
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X

Input profile: UF_29 UF_29_Fld#_20_Plt#_5

 
USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

1._UF_666 UF_666_Fld#_71_Plt#_5

98.8 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 71, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

2._UF_705 UF_705_Fld#_76_Plt#_5

98.8 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 76, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

3._SCR_2 SCR_2_Fld#_112_Plt#_2

98.1 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 112, Tree: 2
 Mars, 2018

4._JA_5_/5_[POU] RUQ_1539

93.2 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._EET_103_[ECU] EET_103_[ECU]_Fld#_124_Plt#_6

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 124, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

6._EET_54_[ECU] EET_54_[ECU]_Fld#_139_Plt#_5

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 139, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

7._EET_67_[ECU] EET_67_[ECU]_Fld#_67_Plt#_5

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 67, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

8._JA_1_/19_[POU] RUQ_352

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

9._EET_64_[ECU] EET_64_[ECU]_Fld#_34_Plt#_6

92 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 34, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

10._UF_36 UF_36_Fld#_106_Plt#_5

92 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 106, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998