SNP Profiles matching GU 221 /H

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
1._GU_221_H_Fld#_162_Plt#_1
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._GC-01-75-4-11
CCAAAACCAAGGGGCCAAGGGGAAGGAA
3._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
4._GC-08-266-8-38
CCACAGCCAAGGGGCCAAGGGGAAGGAA
5._RUQ_768
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
6._RUQ_1431
CCACAGCCAAGGGGCCAAGGGGAAGGAA
7._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
8._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
9._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
10._RUQ_191
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
11._MITC-000615
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
12._MITC-000578
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
13._RUQ_222
CCAAAACCAAGGGGCCAAGGGGAAGGAA
14._GC-08-052-1-63
CCAAAACCAAGGGGCCAAGGGGAAGGAA
15._RUQ_814
CCACAGCCAAGGGGCCAAGGGGAAGGAA
16._GC-08-268-8-40
CCAAAACCAAGGGGCCAAGGGGAAGGAA
17._RUQ_815
CCAAAACCAAGGGGCCAAGGGGAAGGAA
18._MITC-000403
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
19._GU-156B_Fld#_198_Plt#_2
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
20._GC-08-170-4-13
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
21._GC-04-23-2-5
CCAAAACCAAGGGGCCAAGGGGAAGGAA
22._RUQ_813
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
23._RUQ_1543
CCACGGCCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
1._GU_221_H_Fld#_162_Plt#_1
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
2._GC-01-75-4-11
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
3._RUQ_200
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
4._GC-08-266-8-38
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
5._RUQ_768
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
6._RUQ_1431
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
7._MITC-000612
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
8._GC-01-73-4-9
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
9._GC-01-73-4-9
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
10._RUQ_191
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
11._MITC-000615
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
12._MITC-000578
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
13._RUQ_222
AAAAAAAAGGAAGGAAGGCCAGAAAAGG
14._GC-08-052-1-63
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
15._RUQ_814
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
16._GC-08-268-8-40
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
17._RUQ_815
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
18._MITC-000403
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
19._GU-156B_Fld#_198_Plt#_2
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
20._GC-08-170-4-13
AAAAAAAGGGAAGGAAGGGGGGAAAAGG
21._GC-04-23-2-5
AAAAAAGGGGAAGGAAGGCCGGAAAAGG
22._RUQ_813
AAAAAAAGGGAAGGAAGGGGGGAAAAGG
23._RUQ_1543
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
1._GU_221_H_Fld#_162_Plt#_1
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
2._GC-01-75-4-11
TTGGAAGGGGGGGGGGCCTTATGGGGAA
3._RUQ_200
TTGGAAGGGGGGGGGGCCTTATGGGGAA
4._GC-08-266-8-38
TTGGAAGGGGGGGGGGCCTTATAGGGAA
5._RUQ_768
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
6._RUQ_1431
TTGGAAGGGGGGGGGGCCTTATAGGGAA
7._MITC-000612
TTGGAAGGGGGGGGGGCCTTATAGGGAA
8._GC-01-73-4-9
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
9._GC-01-73-4-9
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
10._RUQ_191
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
11._MITC-000615
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
12._MITC-000578
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
13._RUQ_222
TTGGAAGGGGGGGGGGCCTTATGGGGAA
14._GC-08-052-1-63
TTGGAAGGGGGGGGGGCCTTATGGGGAA
15._RUQ_814
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
16._GC-08-268-8-40
TTGGAAGGGGGGGGGGCCTTATGGGGAA
17._RUQ_815
TTGGAAGGGGGGGGGGCCTTATGGGGAA
18._MITC-000403
TTGGAAGGGGGGGGGGCCTTATGGGGAA
19._GU-156B_Fld#_198_Plt#_2
TTGGAAGGGGGGGGGGCCTTATGGGGAA
20._GC-08-170-4-13
TTGGAAGGGGGGGGGG_TTAAGGGGAA
21._GC-04-23-2-5
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
22._RUQ_813
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
23._RUQ_1543
TTGGAAGGGGGGGGGGCCTTATAGGGAA
 4344454647484950515253545556
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_221_H_Fld#_162_Plt#_1
AGGGGGGGTTGGAACCAAGGCCGGCCCC
2._GC-01-75-4-11
AAGGGGGGTTGGAACCAAGGCCGGCCAC
3._RUQ_200
AAGGGGGGTTGGAACCAAGGCCGGCCAC
4._GC-08-266-8-38
AAGGGGGGTTGGAACCAAGGCCGGCCAC
5._RUQ_768
AAGGGGGGTTGGAACCAAGGCCGGCCCC
6._RUQ_1431
AAGGGGGGTTGGAACCAAGGCCGGCCAC
7._MITC-000612
AAGGGGGGTTGGAACCAAGGCCGGCCAC
8._GC-01-73-4-9
AGGGGGGGTTGGAACCAAGGCCAGCCCC
9._GC-01-73-4-9
AGGGGGGGTTGGAACCAAGGCCAGCCCC
10._RUQ_191
AGGGGGGGTTGGAACCAAGGCCAGCCCC
11._MITC-000615
AGGGGGGGTTGGAACCAAGGCCAGCCCC
12._MITC-000578
AGGGGGGGTTGGAACCAAGGCCAGCCCC
13._RUQ_222
AAGGGGGGTTGGAACCAAGGCCGGCCCC
14._GC-08-052-1-63
AAGGGGGGTTGGAACCAAGGCCGGCCCC
15._RUQ_814
AGGGGGGGTTGGAACCAAGGCCAGCCAA
16._GC-08-268-8-40
AAGGGGGGTTGGAACCAAGGCCGGCCCC
17._RUQ_815
AAGGGGGGTTGGAACCAAGGCCGGCCCC
18._MITC-000403
AGGGGGGGTTGGAACCAAGGCCGGCCCC
19._GU-156B_Fld#_198_Plt#_2
AGGGGGGGTTGGAACCAAGGCCGGCCCC
20._GC-08-170-4-13
AAGGGGGGTTGGAACCAAGGCCGGCCCC
21._GC-04-23-2-5
AAGGGGGGTTGGAACCAAGGCCGGCCAC
22._RUQ_813
AAGGGGGGTTGGAACCAAGGCCGGCCCC
23._RUQ_1543
AGGGGGGGTTGGAACCAAGGCCGGCCAA
 5758596061626364656667686970
_Input profile
GGGGGGAGAACCAAAAAAAAAAAACCGG
1._GU_221_H_Fld#_162_Plt#_1
GGGGGGAGAACCAAAAAAAAAAAACCGG
2._GC-01-75-4-11
GGGGGGAGAACCAAAAAAAAAAAACCGG
3._RUQ_200
GGGGGGAGAACCAAAAAAAAAAAACCGG
4._GC-08-266-8-38
GGGGGGAGAACCAAAAACAAAAAACCGG
5._RUQ_768
GGGGAGAGAACCAAAACCAAAAAACCGG
6._RUQ_1431
GGGGGGAGAACCAAAAACAAAAAACCGG
7._MITC-000612
GGGGGGAGAACCAAAAACAAAAAACCGG
8._GC-01-73-4-9
GGGGGGGGAACCAAAACCAAAAAACCGG
9._GC-01-73-4-9
GGGGGGGGAACCAAAACCAAAAAACCGG
10._RUQ_191
GGGGGGGGAACCAAAACCAAAAAACCGG
11._MITC-000615
GGGGGGGGAACCAAAACCAAAAAACCGG
12._MITC-000578
GGGGGGGGAACCAAAACCAAAAAACCGG
13._RUQ_222
GGGGGGAGAACCAAAAACAAAAAACCGG
14._GC-08-052-1-63
GGGGGGAGAACCAAAAACAAAAAACCGG
15._RUQ_814
GGGGGGGGAACCAAAAACAAAAAACCGG
16._GC-08-268-8-40
GGGGGGGGAACCAAAAAAAAAAAACCGG
17._RUQ_815
GGGGGGGGAACCAAAAAAAAAAAACCGG
18._MITC-000403
GGGGGGAAAACCAAAACCAAAAAACCGG
19._GU-156B_Fld#_198_Plt#_2
GGGGGGAAAACCAAAACCAAAAAACCGG
20._GC-08-170-4-13
GGGGAGAGAACCAAAACCAAAAAACCGG
21._GC-04-23-2-5
GGGGGGAGAACCAAAAACAAAAAACCGG
22._RUQ_813
GGGGAGAGAACCAAAACCAAAAAACCGG
23._RUQ_1543
GGGGAGAAAACCAAAAACAAAAAACCGG
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
1._GU_221_H_Fld#_162_Plt#_1
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
2._GC-01-75-4-11
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
3._RUQ_200
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
4._GC-08-266-8-38
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
5._RUQ_768
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
6._RUQ_1431
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
7._MITC-000612
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
8._GC-01-73-4-9
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
9._GC-01-73-4-9
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
10._RUQ_191
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
11._MITC-000615
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
12._MITC-000578
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
13._RUQ_222
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
14._GC-08-052-1-63
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
15._RUQ_814
CCGGGGGGCCGGGGGGAAAAGGX_XX_XX_X
16._GC-08-268-8-40
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
17._RUQ_815
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
18._MITC-000403
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
19._GU-156B_Fld#_198_Plt#_2
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
20._GC-08-170-4-13
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
21._GC-04-23-2-5
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
22._RUQ_813
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
23._RUQ_1543
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X

Input profile: GU_221_/H GC-01-74-4-10

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_221_/H GU_221_H_Fld#_162_Plt#_1

identical
81 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

2._GU_221_/C GC-01-75-4-11

95.1 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._GU_221_/C RUQ_200

95.1 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._GU_241 GC-08-266-8-38

93.8 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._GU_219_/F RUQ_768

93.8 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._GU_241_/P RUQ_1431

93.8 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._GU_241_/P MITC-000612

93.8 %
81 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

8._GU_144_/C GC-01-73-4-9

93.2 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

9._GU_144_/C GC-01-73-4-9

93.2 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._GU_144_/C RUQ_191

93.2 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

11._GU_144_/C MITC-000615

93.2 %
81 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

12._GU_144_/C MITC-000578

93.2 %
81 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

13._GU_147_/H RUQ_222

92.6 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

14._GU_335 GC-08-052-1-63

92 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 63, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._GU_243_/H RUQ_814

92 %
81 shared markers

 View  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._GU_310 GC-08-268-8-40

90.7 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_310_/P RUQ_815

90.7 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._GU_156_B MITC-000403

90.7 %
81 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

19._GU_156_B GU-156B_Fld#_198_Plt#_2

90.7 %
81 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 198, Tree: 2
 Mars, 2018

20._GU_114 GC-08-170-4-13

90 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._GU_353 GC-04-23-2-5

90.1 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 2, Rep: 5, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._GU_114_/P RUQ_813

90.1 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._GU_183_/G RUQ_1543

90.1 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998