SNP Profiles matching KER 3

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAACCAAGGGGCCAAGGGGAAGGAA
1._GU_310___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
2._GU_310_/P___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
3._GU_353___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
4._GU_144_/C___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
5._GU_144_/C___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
6._GU_144_/C___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
7._GU_144_/C___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
8._GU_144_/C___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
9._GU_221_/C___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
10._GU_335___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
11._CRU_156___
CCACAGCCAAGGGGCCAAGGGGAAGGAA
12._GU_195_/V___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
13._GU_221_/C___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
14._GU_136_/H___
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
15._GU_175___
CCACAGCCAAGGGGCCAAGGGGAAGGAA
16._GU_221_/H___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
17._GU_147_/H___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
18._GU_221_/H___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
19._GU_144_/C___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
20._GU_296_/H___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
21._GU_219_/F___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAGGGGAAGGCCGGCCGGAAAAGG
1._GU_310___
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
2._GU_310_/P___
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
3._GU_353___
AAAAAAGGGGAAGGAAGGCCGGAAAAGG
4._GU_144_/C___
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
5._GU_144_/C___
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
6._GU_144_/C___
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
7._GU_144_/C___
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
8._GU_144_/C___
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
9._GU_221_/C___
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
10._GU_335___
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
11._CRU_156___
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
12._GU_195_/V___
AAAAAAGGGGAAGGAAGGCCGGAAAAGG
13._GU_221_/C___
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
14._GU_136_/H___
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
15._GU_175___
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
16._GU_221_/H___
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
17._GU_147_/H___
AAAAAAAAGGAAGGAAGGCCAGAAAAGG
18._GU_221_/H___
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
19._GU_144_/C___
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
20._GU_296_/H___
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
21._GU_219_/F___
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGGGGGGGGGCCTTTTAAGGAA
1._GU_310___
TTGGAAGGGGGGGGGGCCTTATGGGGAA
2._GU_310_/P___
TTGGAAGGGGGGGGGGCCTTATGGGGAA
3._GU_353___
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
4._GU_144_/C___
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
5._GU_144_/C___
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
6._GU_144_/C___
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
7._GU_144_/C___
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
8._GU_144_/C___
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
9._GU_221_/C___
TTGGAAGGGGGGGGGGCCTTATGGGGAA
10._GU_335___
TTGGAAGGGGGGGGGGCCTTATGGGGAA
11._CRU_156___
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
12._GU_195_/V___
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
13._GU_221_/C___
TTGGAAGGGGGGGGGGCCTTATGGGGAA
14._GU_136_/H___
TTGGAAGGGGGGGGGG__TTATGGGGAA
15._GU_175___
TTGGAAGGGGGGGGGG__TTTTGGGGAA
16._GU_221_/H___
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
17._GU_147_/H___
TTGGAAGGGGGGGGGGCCTTATGGGGAA
18._GU_221_/H___
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
19._GU_144_/C___
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
20._GU_296_/H___
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
21._GU_219_/F___
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGAAGGAACCAAGGCCAGCCCC
1._GU_310___
AAGGGGGGTTGGAACCAAGGCCGGCCCC
2._GU_310_/P___
AAGGGGGGTTGGAACCAAGGCCGGCCCC
3._GU_353___
AAGGGGGGTTGGAACCAAGGCCGGCCAC
4._GU_144_/C___
AGGGGGGGTTGGAACCAAGGCCAGCCCC
5._GU_144_/C___
AGGGGGGGTTGGAACCAAGGCCAGCCCC
6._GU_144_/C___
AGGGGGGGTTGGAACCAAGGCCAGCCCC
7._GU_144_/C___
AGGGGGGGTTGGAACCAAGGCCAGCCCC
8._GU_144_/C___
AGGGGGGGTTGGAACCAAGGCCAGCCCC
9._GU_221_/C___
AAGGGGGGTTGGAACCAAGGCCGGCCAC
10._GU_335___
AAGGGGGGTTGGAACCAAGGCCGGCCCC
11._CRU_156___
AAGGGGGGTTGGAACCAAGGCCAGCCCC
12._GU_195_/V___
AAGGGGGGTTGGAACCAAGGCCGGCCAA
13._GU_221_/C___
AAGGGGGGTTGGAACCAAGGCCGGCCAC
14._GU_136_/H___
AAGGGGGGTTGGAACCAAGGCCGGCCCC
15._GU_175___
AAGGGGGGTTGGAACCAAGGCCAGCCCC
16._GU_221_/H___
AGGGGGGGTTGGAACCAAGGCCGGCCCC
17._GU_147_/H___
AAGGGGGGTTGGAACCAAGGCCGGCCCC
18._GU_221_/H___
AGGGGGGGTTGGAACCAAGGCCGGCCCC
19._GU_144_/C___
AAGGGGGGTTGGAACCAAGGCCGGCCAC
20._GU_296_/H___
AAGGGGGGTTGGAACCAAGGCCGGCCAC
21._GU_219_/F___
AAGGGGGGTTGGAACCAAGGCCGGCCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGGGAACCAAAAAAAAAAAACCGG
1._GU_310___
GGGGGGGGAACCAAAAAAAAAAAACCGG
2._GU_310_/P___
GGGGGGGGAACCAAAAAAAAAAAACCGG
3._GU_353___
GGGGGGAGAACCAAAAACAAAAAACCGG
4._GU_144_/C___
GGGGGGGGAACCAAAACCAAAAAACCGG
5._GU_144_/C___
GGGGGGGGAACCAAAACCAAAAAACCGG
6._GU_144_/C___
GGGGGGGGAACCAAAACCAAAAAACCGG
7._GU_144_/C___
GGGGGGGGAACCAAAACCAAAAAACCGG
8._GU_144_/C___
GGGGGGGGAACCAAAACCAAAAAACCGG
9._GU_221_/C___
GGGGGGAGAACCAAAAAAAAAAAACCGG
10._GU_335___
GGGGGGAGAACCAAAAACAAAAAACCGG
11._CRU_156___
GGGGGGAAAACCAAAACCAAAAAACCGG
12._GU_195_/V___
GGGGGGAAAACCAAAAACAAAAAACCGG
13._GU_221_/C___
GGGGGGAGAACCAAAAAAAAAAAACCGG
14._GU_136_/H___
GGGGGGGGAACCAAAACCAAAAAACCGG
15._GU_175___
GGGGGGAAAACCAAAACCAAAAAACCGG
16._GU_221_/H___
GGGGGGAGAACCAAAAAAAAAAAACCGG
17._GU_147_/H___
GGGGGGAGAACCAAAAACAAAAAACCGG
18._GU_221_/H___
GGGGGGAGAACCAAAAAAAAAAAACCGG
19._GU_144_/C___
GGGGGGGGAACCAAAACCAAAAAACCGG
20._GU_296_/H___
GGGGGGGGAACCAAAACCAAAAAACCGG
21._GU_219_/F___
GGGGAGAGAACCAAAACCAAAAAACCGG
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
1._GU_310___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
2._GU_310_/P___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
3._GU_353___
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
4._GU_144_/C___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
5._GU_144_/C___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
6._GU_144_/C___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
7._GU_144_/C___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
8._GU_144_/C___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
9._GU_221_/C___
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
10._GU_335___
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
11._CRU_156___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
12._GU_195_/V___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
13._GU_221_/C___
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
14._GU_136_/H___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
15._GU_175___
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
16._GU_221_/H___
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
17._GU_147_/H___
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
18._GU_221_/H___
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
19._GU_144_/C___
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
20._GU_296_/H___
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
21._GU_219_/F___
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X

Input profile: KER_3 RUQ_406

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_310 GC-08-268-8-40

93.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_310_/P RUQ_815

93.8 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._GU_353 GC-04-23-2-5

92.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 2, Rep: 5, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

4._GU_144_/C GC-01-73-4-9

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

5._GU_144_/C GC-01-73-4-9

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._GU_144_/C RUQ_191

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._GU_144_/C MITC-000615

92 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

8._GU_144_/C MITC-000578

92 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

9._GU_221_/C GC-01-75-4-11

91.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._GU_335 GC-08-052-1-63

91.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 63, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

11._CRU_156 RUQ_880

91.4 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

12._GU_195_/V RUQ_1069

91.4 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

13._GU_221_/C RUQ_200

91.4 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

14._GU_136_/H GC-03-19-2-8

91.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._GU_175 GC-01-100-5-17

91.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 17, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

16._GU_221_/H GC-01-74-4-10

90.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_147_/H RUQ_222

90.7 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._GU_221_/H GU_221_H_Fld#_162_Plt#_1

90.7 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

19._GU_144_/C GC-01-73-4-9

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

20._GU_296_/H GC-01-76-4-12

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._GU_219_/F RUQ_768

90.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998