SNP Profiles matching JA 5 /5 [POU]

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 Key

 1234567891011121314
_Input profile
ACACAGACAAGGAGCCATAGAGAGAGAC
1._RUQ_352
AAACAGAAAAGGAGCCATAGAGAGAAAC
2._EET_64_[ECU]_Fld#_34_Plt#_6
ACACAGACAAGGAGACATAGAGAGAAAC
3._SCR_2_Fld#_112_Plt#_2
ACACAGACAAGGAGCCAAAGAGAGAAAC
4._UF_36_Fld#_106_Plt#_5
ACACAGAAAAGGAGCCATAGGGAGAAAC
5._EET_103_[ECU]_Fld#_124_Plt#_6
ACCCAGACAAGGAGCCATAGAGAGAAAC
6._EET_54_[ECU]_Fld#_139_Plt#_5
ACACAGAAAAGGAGACATAGAGAGAAAC
7._EET_67_[ECU]_Fld#_67_Plt#_5
ACACAGAAAAGGAGACATAGAGAGAAAC
8._UF_666_Fld#_71_Plt#_5
ACACAGACAAGGAGCCATAGAGAGAAAC
9._UF_705_Fld#_76_Plt#_5
ACACAGACAAGGAGCCATAGAGAGAAAC
10._UF_29_Fld#_20_Plt#_5
ACACAGACAAGGAGCCATAGAGAGAAAC
11._RUQ_791
ACACAGAAAAGGAGACATAGAGAGAAAC
12._RUQ_456
ACACAGACAAGGAGACATAGAGAGAGAC
 1516171819202122232425262728
_Input profile
AGACAGAGACGGAGAGCCAGCGAGACAG
1._RUQ_352
AGACAGAGACGGAGAGCCAGCGAGACAG
2._EET_64_[ECU]_Fld#_34_Plt#_6
AGACAGAGACGGAGAGCCAGCGAGACAG
3._SCR_2_Fld#_112_Plt#_2
AAACAGAGACGGAGAGCCAGCGAGACAG
4._UF_36_Fld#_106_Plt#_5
AGACAGAGACGGAGAGCCAGCGAGCCAG
5._EET_103_[ECU]_Fld#_124_Plt#_6
AGACAGAGACGGAGAGCCAGCGAGACAG
6._EET_54_[ECU]_Fld#_139_Plt#_5
AGACAGAAACGGAGAGCCAGCGAGACAG
7._EET_67_[ECU]_Fld#_67_Plt#_5
AGACAGAAACGGAGAGCCAGCGAGACAG
8._UF_666_Fld#_71_Plt#_5
AAACAGAAACGGAGAGCCAGCGAGACAG
9._UF_705_Fld#_76_Plt#_5
AAACAGAAACGGAGAGCCAGCGAGACAG
10._UF_29_Fld#_20_Plt#_5
AAACAGAA_GGAGAGCCAGCGAGACAG
11._RUQ_791
AGACAGAGACGGAGGGCCAGCGAGACAG
12._RUQ_456
AGACGGAAACGGAGAGCCAGCGAGACAG
 2930313233343536373839404142
_Input profile
AGTTGGACGGAAGGGGCGCCATATAGAG
1._RUQ_352
AGTTGGACGGAAGGGGCGCCATATAGGG
2._EET_64_[ECU]_Fld#_34_Plt#_6
AGTTGGACCGAAGGGGCGCCATATGGGG
3._SCR_2_Fld#_112_Plt#_2
AGTTGGACGGAAGGGGCGCCATATGGAG
4._UF_36_Fld#_106_Plt#_5
AGATAGACGGAAGGAGCGCCATATGGGG
5._EET_103_[ECU]_Fld#_124_Plt#_6
AGATGGACGGAAGGGGCGCCATATGGGG
6._EET_54_[ECU]_Fld#_139_Plt#_5
AGTTGGACCGAAGGGGCGCCATATGGAG
7._EET_67_[ECU]_Fld#_67_Plt#_5
AGTTGGACCGAAGGGGCGCCATATGGAG
8._UF_666_Fld#_71_Plt#_5
AGATGGACGGAAGGGGCGCCATATGGGG
9._UF_705_Fld#_76_Plt#_5
AGATGGACGGAAGGGGCGCCATATGGGG
10._UF_29_Fld#_20_Plt#_5
AGATGGACGGAAGGGGCGCCATATGGAG
11._RUQ_791
AGTTGGCCCGAAGGGGCGCCATATGGGG
12._RUQ_456
AGTTGGACCGAAGGGGCGCCATATGGGG
 4344454647484950515253545556
_Input profile
ATAGAGAGAGAAGGAGACACAGACAGCG
1._RUQ_352
ATAGAGAGAGAAGGAGACACAGACAGCG
2._EET_64_[ECU]_Fld#_34_Plt#_6
ATAGAGAGGGAAGGAGACACAGACAGCG
3._SCR_2_Fld#_112_Plt#_2
ATAGAGAGAGATGGAGACACAGACAGCG
4._UF_36_Fld#_106_Plt#_5
ATAGAGAGAGAAGGAGACACAGACAGCG
5._EET_103_[ECU]_Fld#_124_Plt#_6
ATAGAGAGGGAAGGAGACACAGACAGCG
6._EET_54_[ECU]_Fld#_139_Plt#_5
ATAGAAAGAGAAGGAGACACAGACAGCG
7._EET_67_[ECU]_Fld#_67_Plt#_5
ATAGAAAGAGAAGGAGACACAGACAGCG
8._UF_666_Fld#_71_Plt#_5
ATAGAGAGAGATGGAGACACAGACAGCG
9._UF_705_Fld#_76_Plt#_5
ATAGAGAGAGATGGAGACACAGACAGCG
10._UF_29_Fld#_20_Plt#_5
ATAGAGAGAGATGGAGACACAGACAGCG
11._RUQ_791
ATAGAAAGGGAAGGAGACACAGACAGCG
12._RUQ_456
ATAAAAAGAGAAGGAGACACAGACAGCG
 5758596061626364656667686970
_Input profile
CCGGAGAAAGAAACAGAAAAAAAAACCG
1._RUQ_352
CCGGAGAGAGAGCCAGAAAAAAAACCCG
2._EET_64_[ECU]_Fld#_34_Plt#_6
CCGGAGAAAGAACCAGAAAAAAAAACCG
3._SCR_2_Fld#_112_Plt#_2
ACGGGGAGAGAACCAGAAAAAAAAACCG
4._UF_36_Fld#_106_Plt#_5
CCGGAGAAAGAAACAGAAAAAAAAACCG
5._EET_103_[ECU]_Fld#_124_Plt#_6
CCGGGGAAAGAAACAGAAAAAAAACCCG
6._EET_54_[ECU]_Fld#_139_Plt#_5
CCGGAGAAAGAACCAGAAAAAAAAACCG
7._EET_67_[ECU]_Fld#_67_Plt#_5
CCGGAGAAAGAACCAGAAAAAAAAACCG
8._UF_666_Fld#_71_Plt#_5
ACGGGGAAAGAACCAGAAAAAAAAACCG
9._UF_705_Fld#_76_Plt#_5
ACGGGGAAAGAACCAGAAAAAAAAACCG
10._UF_29_Fld#_20_Plt#_5
ACGGGGAGAGAACCAGAAAAAAAAACCG
11._RUQ_791
CCGGAGAAAAAACCAGAAAAAAAAACCG
12._RUQ_456
CCGGAGAAAAAACCAGAAAAAAAACCCC
 717273747576777879808182  
_Input profile
AACCAGCGAGCCAGGGGGATAAAGX_XX_X
1._RUQ_352
AGCCAGCGAGCCAGGGGGATAAAAX_XX_X
2._EET_64_[ECU]_Fld#_34_Plt#_6
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
3._SCR_2_Fld#_112_Plt#_2
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
4._UF_36_Fld#_106_Plt#_5
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
5._EET_103_[ECU]_Fld#_124_Plt#_6
AGCCAGCGAGCCAAGGAGATAAAGX_XX_X
6._EET_54_[ECU]_Fld#_139_Plt#_5
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
7._EET_67_[ECU]_Fld#_67_Plt#_5
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
8._UF_666_Fld#_71_Plt#_5
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
9._UF_705_Fld#_76_Plt#_5
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
10._UF_29_Fld#_20_Plt#_5
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
11._RUQ_791
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
12._RUQ_456
AGCCAGCGAGACAAGGGGATAAAAX_XX_X

Input profile: JA_5_/5_[POU] RUQ_1539

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._JA_1_/19_[POU] RUQ_352

93.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._EET_64_[ECU] EET_64_[ECU]_Fld#_34_Plt#_6

93.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 34, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

3._SCR_2 SCR_2_Fld#_112_Plt#_2

93.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 112, Tree: 2
 Mars, 2018

4._UF_36 UF_36_Fld#_106_Plt#_5

93.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 106, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

5._EET_103_[ECU] EET_103_[ECU]_Fld#_124_Plt#_6

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 124, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

6._EET_54_[ECU] EET_54_[ECU]_Fld#_139_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 139, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

7._EET_67_[ECU] EET_67_[ECU]_Fld#_67_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 67, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

8._UF_666 UF_666_Fld#_71_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 71, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

9._UF_705 UF_705_Fld#_76_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 76, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

10._UF_29 UF_29_Fld#_20_Plt#_5

93.2 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

11._EET_59_[ECU] RUQ_791

90.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

12._JA_10_/12_[POU] RUQ_456

90.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998