SNP Profiles matching GU 243 /H

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCACAGCCAAGGGGCCAAGGGGAAGGAA
1._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._GC-01-76-4-12
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
3._RUQ_1543
CCACGGCCAAGGGGCCAAGGGGAAGGAA
4._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
5._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
6._GC-01-74-4-10
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
7._GC-08-266-8-38
CCACAGCCAAGGGGCCAAGGGGAAGGAA
8._RUQ_191
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
9._RUQ_1431
CCACAGCCAAGGGGCCAAGGGGAAGGAA
10._MITC-000615
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
11._MITC-000578
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
12._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
13._GU_221_H_Fld#_162_Plt#_1
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
14._GC-01-75-4-11
CCAAAACCAAGGGGCCAAGGGGAAGGAA
15._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
16._GC-01-94-5-11
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
17._GC-01-78-4-14
CCACAACCAAGGGGCCAAGGGGAAGGAA
18._GC-01-94-5-11
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
19._GC-01-100-5-17
CCACAGCCAAGGGGCCAAGGGGAAGGAA
20._RUQ_880
CCACAGCCAAGGGGCCAAGGGGAAGGAA
21._RUQ_188
CCACAACCAAGGGGCCAAGGGGAAGGAA
22._RUQ_222
CCAAAACCAAGGGGCCAAGGGGAAGGAA
23._RUQ_195
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
1._GC-01-73-4-9
AAAAAAAGCCGGAAGGAAGGCGGGAAAA
2._GC-01-76-4-12
AAAAAAAG_GGAAGGAAGGCGGGAAAA
3._RUQ_1543
AAAAAAAG_GGAAGGAAGGCGGGAAAA
4._GC-01-73-4-9
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
5._GC-01-73-4-9
AAAAAAAG_GGAAGGAAGGCCGGAAAA
6._GC-01-74-4-10
AAAAAAAG_GGAAGGAAGGCCAGAAAA
7._GC-08-266-8-38
AAAAAAAACCGGAAGGAAGGCGAGAAAA
8._RUQ_191
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
9._RUQ_1431
AAAAAAAACCGGAAGGAAGGCGAGAAAA
10._MITC-000615
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
11._MITC-000578
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
12._MITC-000612
AAAAAAAACCGGAAGGAAGGCGAGAAAA
13._GU_221_H_Fld#_162_Plt#_1
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
14._GC-01-75-4-11
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
15._RUQ_200
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
16._GC-01-94-5-11
AAAAAAAACCGGAAGGAAGGCCAAAAAA
17._GC-01-78-4-14
AAAAAAAA_GGAAGGAAGGCGGGAAAA
18._GC-01-94-5-11
AAAAAAAA_GGAAGGAAGGCCAAAAAA
19._GC-01-100-5-17
AAAAAAAA_GGAAGGAAGGCCGGAAAA
20._RUQ_880
AAAAAAAACCGGAAGGAAGGCCGGAAAA
21._RUQ_188
AAAAAAAACCGGAAGGAAGGCGGGAAAA
22._RUQ_222
AAAAAAAACCGGAAGGAAGGCCAGAAAA
23._RUQ_195
AAAAAAAACCGGAAGGAAGGCCAAAAAA
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
1._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
2._GC-01-76-4-12
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
3._RUQ_1543
GGTTGGAAGGGGGGGGGGCCTTATAGGG
4._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
5._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
6._GC-01-74-4-10
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
7._GC-08-266-8-38
GGTTGGAAGGGGGGGGGGCCTTATAGGG
8._RUQ_191
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
9._RUQ_1431
GGTTGGAAGGGGGGGGGGCCTTATAGGG
10._MITC-000615
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
11._MITC-000578
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
12._MITC-000612
GGTTGGAAGGGGGGGGGGCCTTATAGGG
13._GU_221_H_Fld#_162_Plt#_1
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
14._GC-01-75-4-11
GGTTGGAAGGGGGGGGGGCCTTATGGGG
15._RUQ_200
GGTTGGAAGGGGGGGGGGCCTTATGGGG
16._GC-01-94-5-11
GGTTGGAAGGGGGGGGGG_TTTTGGGG
17._GC-01-78-4-14
GGTTGGAAGGGGGGGGGGCCTTATGGGG
18._GC-01-94-5-11
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
19._GC-01-100-5-17
GGTTGGAAGGGGGGGGGG_TTTTGGGG
20._RUQ_880
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
21._RUQ_188
GGTTGGAAGGGGGGGGGGCCTTATGGGG
22._RUQ_222
GGTTGGAAGGGGGGGGGGCCTTATGGGG
23._RUQ_195
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
 4344454647484950515253545556
_Input profile
AAAGGGGGGGTTGGAACCAAGGCCAGCC
1._GC-01-73-4-9
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._GC-01-76-4-12
AAAAGGGGGGTTGGAACCAAGGCCGGCC
3._RUQ_1543
AAAGGGGGGGTTGGAACCAAGGCCGGCC
4._GC-01-73-4-9
AAAGGGGGGGTTGGAACCAAGGCCAGCC
5._GC-01-73-4-9
AAAGGGGGGGTTGGAACCAAGGCCAGCC
6._GC-01-74-4-10
AAAGGGGGGGTTGGAACCAAGGCCGGCC
7._GC-08-266-8-38
AAAAGGGGGGTTGGAACCAAGGCCGGCC
8._RUQ_191
AAAGGGGGGGTTGGAACCAAGGCCAGCC
9._RUQ_1431
AAAAGGGGGGTTGGAACCAAGGCCGGCC
10._MITC-000615
AAAGGGGGGGTTGGAACCAAGGCCAGCC
11._MITC-000578
AAAGGGGGGGTTGGAACCAAGGCCAGCC
12._MITC-000612
AAAAGGGGGGTTGGAACCAAGGCCGGCC
13._GU_221_H_Fld#_162_Plt#_1
AAAGGGGGGGTTGGAACCAAGGCCGGCC
14._GC-01-75-4-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
15._RUQ_200
AAAAGGGGGGTTGGAACCAAGGCCGGCC
16._GC-01-94-5-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
17._GC-01-78-4-14
AAAGGGGGGGTTGGAACCAAGGCCGGCC
18._GC-01-94-5-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
19._GC-01-100-5-17
AAAAGGGGGGTTGGAACCAAGGCCAGCC
20._RUQ_880
AAAAGGGGGGTTGGAACCAAGGCCAGCC
21._RUQ_188
AAAGGGGGGGTTGGAACCAAGGCCGGCC
22._RUQ_222
AAAAGGGGGGTTGGAACCAAGGCCGGCC
23._RUQ_195
AAAAGGGGGGTTGGAACCAAGGCCGGCC
 5758596061626364656667686970
_Input profile
AAGGGGGGGGAACCAAAAACAAAAAACC
1._GC-01-73-4-9
ACGGGGGGGGAACCAAAACCAAAAAACC
2._GC-01-76-4-12
ACGGGGGGGGAACCAAAACCAAAAAACC
3._RUQ_1543
AAGGGGAGAAAACCAAAAACAAAAAACC
4._GC-01-73-4-9
CCGGGGGGGGAACCAAAACCAAAAAACC
5._GC-01-73-4-9
CCGGGGGGGGAACCAAAACCAAAAAACC
6._GC-01-74-4-10
CCGGGGGGAGAACCAAAAAAAAAAAACC
7._GC-08-266-8-38
ACGGGGGGAGAACCAAAAACAAAAAACC
8._RUQ_191
CCGGGGGGGGAACCAAAACCAAAAAACC
9._RUQ_1431
ACGGGGGGAGAACCAAAAACAAAAAACC
10._MITC-000615
CCGGGGGGGGAACCAAAACCAAAAAACC
11._MITC-000578
CCGGGGGGGGAACCAAAACCAAAAAACC
12._MITC-000612
ACGGGGGGAGAACCAAAAACAAAAAACC
13._GU_221_H_Fld#_162_Plt#_1
CCGGGGGGAGAACCAAAAAAAAAAAACC
14._GC-01-75-4-11
ACGGGGGGAGAACCAAAAAAAAAAAACC
15._RUQ_200
ACGGGGGGAGAACCAAAAAAAAAAAACC
16._GC-01-94-5-11
CCGGGGGGGGAACCAAAAACAAAAAACC
17._GC-01-78-4-14
ACGGGGGGGGAACCAAAACCAAAAAACC
18._GC-01-94-5-11
CCGGGGGGGGAACCAAAAACAAAAAACC
19._GC-01-100-5-17
CCGGGGGGAAAACCAAAACCAAAAAACC
20._RUQ_880
CCGGGGGGAAAACCAAAACCAAAAAACC
21._RUQ_188
ACGGGGGGGGAACCAAAACCAAAAAACC
22._RUQ_222
CCGGGGGGAGAACCAAAAACAAAAAACC
23._RUQ_195
CCGGGGGGGGAACCAAAAACAAAAAACC
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
1._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
2._GC-01-76-4-12
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
3._RUQ_1543
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
4._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
5._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
6._GC-01-74-4-10
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
7._GC-08-266-8-38
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
8._RUQ_191
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
9._RUQ_1431
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
10._MITC-000615
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
11._MITC-000578
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
12._MITC-000612
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
13._GU_221_H_Fld#_162_Plt#_1
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
14._GC-01-75-4-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
15._RUQ_200
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
16._GC-01-94-5-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
17._GC-01-78-4-14
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
18._GC-01-94-5-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
19._GC-01-100-5-17
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
20._RUQ_880
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
21._RUQ_188
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
22._RUQ_222
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
23._RUQ_195
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X

Input profile: GU_243_/H RUQ_814

 
 View  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_144_/C GC-01-73-4-9

92.1 %
82 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

2._GU_296_/H GC-01-76-4-12

92 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._GU_183_/G RUQ_1543

92 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._GU_144_/C GC-01-73-4-9

91.5 %
82 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

5._GU_144_/C GC-01-73-4-9

91.4 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._GU_221_/H GC-01-74-4-10

91.4 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

7._GU_241 GC-08-266-8-38

91.5 %
82 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

8._GU_144_/C RUQ_191

91.5 %
82 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

9._GU_241_/P RUQ_1431

91.5 %
82 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._GU_144_/C MITC-000615

91.5 %
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

11._GU_144_/C MITC-000578

91.5 %
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

12._GU_241_/P MITC-000612

91.5 %
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

13._GU_221_/H GU_221_H_Fld#_162_Plt#_1

91.5 %
82 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

14._GU_221_/C GC-01-75-4-11

90.9 %
82 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._GU_221_/C RUQ_200

90.9 %
82 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._GU_171_/C GC-01-94-5-11

90.1 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

17._GU_154_/C GC-01-78-4-14

90.1 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._GU_171_/C GC-01-94-5-11

90.1 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._GU_175 GC-01-100-5-17

90 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 17, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._CRU_156 RUQ_880

90.2 %
82 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

21._GU_125_/C RUQ_188

90.2 %
82 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._GU_147_/H RUQ_222

90.2 %
82 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._GU_171_/C RUQ_195

90.2 %
82 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998