SNP Profiles matching GU 183 /G

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 Key

 1234567891011121314
_Input profile
CCACGGCCAAGGGGCCAAGGGGAAGGAA
1._GC-08-266-8-38
CCACAGCCAAGGGGCCAAGGGGAAGGAA
2._RUQ_1431
CCACAGCCAAGGGGCCAAGGGGAAGGAA
3._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
4._GC-01-80-4-16
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
5._GC-08-052-1-63
CCAAAACCAAGGGGCCAAGGGGAAGGAA
6._GC-01-116-6-13
CCACGGCCAAGGGGCCAAGGGGAAGGAA
7._RUQ_814
CCACAGCCAAGGGGCCAAGGGGAAGGAA
8._RUQ_228
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
9._MITC-000670
CCACGGCCAAGGGGCCAAGGGGAAGGAA
10._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
11._GC-01-78-4-14
CCACAACCAAGGGGCCAAGGGGAAGGAA
12._GC-01-76-4-12
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
13._RUQ_188
CCACAACCAAGGGGCCAAGGGGAAGGAA
14._MITC-000047
CCACAGCCAAGGGGCCAAGGGGAAGGAA
15._GU_185_Fld#_200_Plt#_1
CCACAGCCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
1._GC-08-266-8-38
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
2._RUQ_1431
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
3._MITC-000612
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
4._GC-01-80-4-16
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
5._GC-08-052-1-63
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
6._GC-01-116-6-13
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
7._RUQ_814
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
8._RUQ_228
AAAAAAAAGGAAGGACGGCGGGAAAAGG
9._MITC-000670
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
10._GC-01-73-4-9
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
11._GC-01-78-4-14
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
12._GC-01-76-4-12
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
13._RUQ_188
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
14._MITC-000047
AAAAAAAAGGAAGGACGGGGGGAAAAGG
15._GU_185_Fld#_200_Plt#_1
AAAAAAAAGGAAGGACGGGGGGAAAAGG
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTATAGGGAA
1._GC-08-266-8-38
TTGGAAGGGGGGGGGGCCTTATAGGGAA
2._RUQ_1431
TTGGAAGGGGGGGGGGCCTTATAGGGAA
3._MITC-000612
TTGGAAGGGGGGGGGGCCTTATAGGGAA
4._GC-01-80-4-16
TTGGAAGGGGGGGGGG_TTATGGGGAA
5._GC-08-052-1-63
TTGGAAGGGGGGGGGGCCTTATGGGGAA
6._GC-01-116-6-13
TTGGAAGGGGGGGGGG_TTATGGGGAA
7._RUQ_814
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
8._RUQ_228
TTGGAAGGGGGGGGGGCCTTATGGGGAA
9._MITC-000670
TTGGAAGGGGGGGGGGCCTTATGGGGAA
10._GC-01-73-4-9
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
11._GC-01-78-4-14
TTGGAAGGGGGGGGGGCCTTATGGGGAA
12._GC-01-76-4-12
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
13._RUQ_188
TTGGAAGGGGGGGGGGCCTTATGGGGAA
14._MITC-000047
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
15._GU_185_Fld#_200_Plt#_1
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
 4344454647484950515253545556
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCAA
1._GC-08-266-8-38
AAGGGGGGTTGGAACCAAGGCCGGCCAC
2._RUQ_1431
AAGGGGGGTTGGAACCAAGGCCGGCCAC
3._MITC-000612
AAGGGGGGTTGGAACCAAGGCCGGCCAC
4._GC-01-80-4-16
AGGGGGGGTTGGAACCAAGGCCGGCCAA
5._GC-08-052-1-63
AAGGGGGGTTGGAACCAAGGCCGGCCCC
6._GC-01-116-6-13
AAGGGGGGTTGGAACCAAGGCCGGCCAC
7._RUQ_814
AGGGGGGGTTGGAACCAAGGCCAGCCAA
8._RUQ_228
AGGGGGGGTTGGAACCAAGGCCGGCCAA
9._MITC-000670
AAGGGGGGTTGGAACCAAGGCCGGCCAC
10._GC-01-73-4-9
AAGGGGGGTTGGAACCAAGGCCGGCCAC
11._GC-01-78-4-14
AGGGGGGGTTGGAACCAAGGCCGGCCAC
12._GC-01-76-4-12
AAGGGGGGTTGGAACCAAGGCCGGCCAC
13._RUQ_188
AGGGGGGGTTGGAACCAAGGCCGGCCAC
14._MITC-000047
AGGGGGGGTTGGAACCAAGGCCGGCCAC
15._GU_185_Fld#_200_Plt#_1
AGGGGGGGTTGGAACCAAGGCCGGCCAC
 5758596061626364656667686970
_Input profile
GGGGAGAAAACCAAAAACAAAAAACCGG
1._GC-08-266-8-38
GGGGGGAGAACCAAAAACAAAAAACCGG
2._RUQ_1431
GGGGGGAGAACCAAAAACAAAAAACCGG
3._MITC-000612
GGGGGGAGAACCAAAAACAAAAAACCGG
4._GC-01-80-4-16
GGGGAGGGAACCAAAACCAAAAAACCGG
5._GC-08-052-1-63
GGGGGGAGAACCAAAAACAAAAAACCGG
6._GC-01-116-6-13
GGGGGGGGAACCAAAACCAAAAAACCGG
7._RUQ_814
GGGGGGGGAACCAAAAACAAAAAACCGG
8._RUQ_228
GGGGGGAAAACCAAAACCAAAAAACCGG
9._MITC-000670
GGGGGGGGAACCAAAACCAAAAAACCGG
10._GC-01-73-4-9
GGGGGGGGAACCAAAACCAAAAAACCGG
11._GC-01-78-4-14
GGGGGGGGAACCAAAACCAAAAAACCGG
12._GC-01-76-4-12
GGGGGGGGAACCAAAACCAAAAAACCGG
13._RUQ_188
GGGGGGGGAACCAAAACCAAAAAACCGG
14._MITC-000047
GGGGAGAAAACCAAAACCAAAAAACCGG
15._GU_185_Fld#_200_Plt#_1
GGGGAGAAAACCAAAACCAAAAAACCGG
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
1._GC-08-266-8-38
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
2._RUQ_1431
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
3._MITC-000612
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
4._GC-01-80-4-16
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
5._GC-08-052-1-63
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
6._GC-01-116-6-13
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
7._RUQ_814
CCGGGGGGCCGGGGGGAAAAGGX_XX_XX_X
8._RUQ_228
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
9._MITC-000670
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
10._GC-01-73-4-9
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
11._GC-01-78-4-14
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
12._GC-01-76-4-12
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
13._RUQ_188
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
14._MITC-000047
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
15._GU_185_Fld#_200_Plt#_1
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X

Input profile: GU_183_/G RUQ_1543

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_241 GC-08-266-8-38

92.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_241_/P RUQ_1431

92.6 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._GU_241_/P MITC-000612

92.6 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

4._GU_147_/H GC-01-80-4-16

91.3 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._GU_335 GC-08-052-1-63

91.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 63, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._GU_133_/C GC-01-116-6-13

90.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

7._GU_243_/H RUQ_814

90.7 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

8._GU_249_/H RUQ_228

90.7 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

9._GU_133_/C MITC-000670

90.7 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

10._GU_144_/C GC-01-73-4-9

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

11._GU_154_/C GC-01-78-4-14

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

12._GU_296_/H GC-01-76-4-12

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

13._GU_125_/C RUQ_188

90.1 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

14._GU_185_/G MITC-000047

90.1 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

15._GU_185 GU_185_Fld#_200_Plt#_1

90.1 %
81 shared markers

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USDA-TARS, United States of America
Location: Field: 200, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998