SNP Profiles matching EEG 8

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 Key

 1234567891011121314
_Input profile
CCACAAAAAAGGAACCAAGGAGAAAAAC
1._SIAL_44_Fld#_66_Plt#_5
CCCCAAAAAAGGAACCAAGGAAAAAAAC
2._GC-08-90-2-13
CCCCAAAAAAGGAACCAAGGGGAAAACC
3._RUQ_436
CCCCAAAAAAGGAACCAAGGGGAAAACC
4._RUQ_44
CCCCAAAAAAGGAACCAAGGGGAAAACC
5._MITC-000366
CCCCAAAAAAGGAACCAAGGGGAAAACC
6._MITC-000412
CCCCAAAAAAGGAACCAAGGGGAAAACC
7._MITC-000717
CCCCAAAAAAGGAACCAAGGGGAAAACC
8._AMELONADO_[VAR]_Fld#_14_Plt#_5
CCCCAAAAAAGGAACCAAGGGGAAAACC
9._CC_37_Fld#_69B_Plt#_4
CCCCAAAAAAGGAACCAAGGGGAAAACC
10._SIAL_42_Fld#_146_Plt#_6
CCCCAAAAAAGGAACCAAGGGGAAAACC
11._SIC_7_Fld#_68_Plt#_6
CCCCAAAAAAGGAACCAAGGGGAAAACC
12._GC-01-56-3-11
CCCCAAAAAAGGAACCAAGGGGAAAACC
13._GC-01-39-2-16
CCCCAAAAAAGGAACCAAGGAGAAAACC
14._RUQ_1719
CCAAAGAAAAGGAACCAAGGAAAAAAAC
15._RUQ_1715
CCAAAAAAAAGGAACCAAGGAAAAAACC
16._MITC-000114
CCAAAAAAAAGGAACCAAGGAAAAAACC
17._GC-01-41-2-18
CCACAAAAAAGGAACCAAGGAAAAAACC
18._GC-01-48-3-3
CCACAAAAAAGGAACCAAGGAAAAAACC
19._GC-01-52-3-7
CCCCAAAAAAGGAACCAAGGAAAAAACC
20._GC-08-71-1-93
CCAAAAAAAAGGAACCAAGGAAAAAACC
21._RUQ_1535
CCAAAAAAAAGGAACCAAGGAAAAAACC
22._RUQ_553
CCAAAAAAAAGGAACCAAGGAAAAAACC
23._SIAL_98_Fld#_84_Plt#_5
CCCCAAAAAAGGAACCAAGGAAAAAACC
24._GC-08-63-1-85
CCACAAAAAAGGAACCAAGGAAAAAACC
25._RUQ_1694
CCAAAAACAAGGAACCAAGGAAAAAACC
26._GC-08-254-8-22
CCAAAAAAAAGGAACCAAGGAAAAAGCC
 1516171819202122232425262728
_Input profile
AAAAAGAAACGGAAAACCGGCCAAAAGG
1._SIAL_44_Fld#_66_Plt#_5
AAAAAGAAACGGAAAACCAGCCAGAAGG
2._GC-08-90-2-13
AAAAGGAAAAGGAAAACCGGCCAAAAGG
3._RUQ_436
AAAAGGAAAAGGAAAACCGGCCAAAAGG
4._RUQ_44
AAAAGGAAAAGGAAAACCGGCCAAAAGG
5._MITC-000366
AAAAGGAAAAGGAAAACCGGCCAAAAGG
6._MITC-000412
AAAAGGAAAAGGAAAACCGGCCAAAAGG
7._MITC-000717
AAAAGGAAAAGGAAAACCGGCCAAAAGG
8._AMELONADO_[VAR]_Fld#_14_Plt#_5
AAAAGGAAAAGGAAAACCGGCCAAAAGG
9._CC_37_Fld#_69B_Plt#_4
AGAAGGAAACGGAAAAACGGCCAAAAGG
10._SIAL_42_Fld#_146_Plt#_6
AAAAGGAAAAGGAAAACCGGCCAAAAGG
11._SIC_7_Fld#_68_Plt#_6
AGAAGGAAACGGAAAAACGGCCAAAAGG
12._GC-01-56-3-11
AAAAGGAAAAGGAAAACCGGCCAAAAGG
13._GC-01-39-2-16
AAAAGGAAAAGGAAAACCGGCCAAAAGG
14._RUQ_1719
AAAAGGAAACGGAAAGCCGGCCAAAAAG
15._RUQ_1715
AAAAGGAAAAGGAAAACCGGCCAAAAGG
16._MITC-000114
AAAAGGAAAAGGAAAACCGGCCAAAAGG
17._GC-01-41-2-18
AGAAGGAAAAGGAAAAACGGCCAGAAGG
18._GC-01-48-3-3
AGAAGGAAAAGGAAAAACGGCCAGAAGG
19._GC-01-52-3-7
AGAAGGAAAAGGAAAAAAGGCCAAAAGG
20._GC-08-71-1-93
GGAAGGAA_GGAAAACCGGCCAAAAGG
21._RUQ_1535
AAAAGGAAAAGGAAAACCGGCCAAAAGG
22._RUQ_553
AAAAGGAAAAGGAAAACCGGCCAAAAGG
23._SIAL_98_Fld#_84_Plt#_5
AAAAAAAAAAGGAAAACCGGCCAAAAGG
24._GC-08-63-1-85
GGAAGGAAAAGGAAAAAAAGCCAGAAGG
25._RUQ_1694
AAAAGGAAAAGGAAAGCCGGCCAAAAAG
26._GC-08-254-8-22
AGAAGGAA_GGAAAAACAGCCAAAAGG
 2930313233343536373839404142
_Input profile
AATTGGAAGGAAGGGGGGCCTTTTGGGG
1._SIAL_44_Fld#_66_Plt#_5
AATTGGAAGGAAGGGGGGCCTTTTGGGG
2._GC-08-90-2-13
AATTGGAAGGAAGGGGGGCCTTTTGGGG
3._RUQ_436
AATTGGAAGGAAGGGGGGCCTTTTGGGG
4._RUQ_44
AATTGGAAGGAAGGGGGGCCTTTTGGGG
5._MITC-000366
AATTGGAAGGAAGGGGGGCCTTTTGGGG
6._MITC-000412
AATTGGAAGGAAGGGGGGCCTTTTGGGG
7._MITC-000717
AATTGGAAGGAAGGGGGGCCTTTTGGGG
8._AMELONADO_[VAR]_Fld#_14_Plt#_5
AATTGGAAGGAAGGGGGGCCTTTTGGGG
9._CC_37_Fld#_69B_Plt#_4
AATTGGAAGGAAGGGGGGCCTTTTGGGG
10._SIAL_42_Fld#_146_Plt#_6
AATTGGAAGGAAGGGGGGCCTTTTGGGG
11._SIC_7_Fld#_68_Plt#_6
AATTGGAAGGAAGGGGGGCCTTTTGGGG
12._GC-01-56-3-11
AATTGGAAGGAAGGGGGG_TTTTGGGG
13._GC-01-39-2-16
AATTGGAAGGAAGGGGGGCCTTTTGGGG
14._RUQ_1719
AATTGGAAGGAAGGGGGGCCTTATGGGG
15._RUQ_1715
AATTGGAAGGAAGGGGGGCCTTTTGGGG
16._MITC-000114
AATTGGAAGGAAGGGGGGCCTTTTGGGG
17._GC-01-41-2-18
AATTGGAAGGAAGGGGGGCCTT_GGGG
18._GC-01-48-3-3
AATTGGAAGGAAGGGGGG_TTTTGGGG
19._GC-01-52-3-7
AATTGGAAGGAAGGGGGGCCTTTTGGGG
20._GC-08-71-1-93
AATTGGAAGGAAGGGGGGCCTTTTGGGG
21._RUQ_1535
AATTGGAAGGAAGGGGGGCCTTTTGGGG
22._RUQ_553
AATTGGAAGGAAGGGGGGCCTTTTGGGG
23._SIAL_98_Fld#_84_Plt#_5
AATTGGAAGGAAGGGGGGCCTTTTGGGG
24._GC-08-63-1-85
AATTGGAAGGAAGGGGGGCCTTTTGGGG
25._RUQ_1694
AATTGGAAGGAGGGGGGGCCTTATGGGG
26._GC-08-254-8-22
AATTGGAAGGAAGGGGGGCCTTTTGGGG
 4344454647484950515253545556
_Input profile
AAAGGGGGGGATGGAACCCCGGAAAACG
1._SIAL_44_Fld#_66_Plt#_5
AAAAGGGGGGTTGGAGCCCCGGAAAACG
2._GC-08-90-2-13
AAAAGGGGGGTTGGAACCCCGGAAAACC
3._RUQ_436
AAAAGGGGGGTTGGAACCCCGGAAAACC
4._RUQ_44
AAAAGGGGGGTTGGAACCCCGGAAAACC
5._MITC-000366
AAAAGGGGGGTTGGAACCCCGGAAAACC
6._MITC-000412
AAAAGGGGGGTTGGAACCCCGGAAAACC
7._MITC-000717
AAAAGGGGGGTTGGAACCCCGGAAAACC
8._AMELONADO_[VAR]_Fld#_14_Plt#_5
AAAAGGGGGGTTGGAACCCCGGAAAACC
9._CC_37_Fld#_69B_Plt#_4
AAAGGGGGGGTTGGAACCCCGGAAAACC
10._SIAL_42_Fld#_146_Plt#_6
AAAAGGGGGGTTGGAACCCCGGAAAACC
11._SIC_7_Fld#_68_Plt#_6
AAAGGGGGGGTTGGAACCCCGGAAAACC
12._GC-01-56-3-11
AAAAGGGGGGTTGGAACCCCGGAAAACC
13._GC-01-39-2-16
AAAAGGGGGGTTGGGGCCCCGGAAAACC
14._RUQ_1719
AAAAGGGGGGATGGAACCCCAGAAAACG
15._RUQ_1715
AAAAGGGGGGTTGGAACCCCGGAAAACC
16._MITC-000114
AAAAGGGGGGTTGGAACCCCGGAAAACC
17._GC-01-41-2-18
AAAGGGGGGGTTGGAGCCCCGGAAAACG
18._GC-01-48-3-3
AAAGGGGGGGTTGGAGCCCCGGAAAACG
19._GC-01-52-3-7
AAAAGGGGGGTTGGAACCCCGGAAAACC
20._GC-08-71-1-93
AAAAGGGGGGTTGGAACCCCGGAAAACC
21._RUQ_1535
AAAAGGGGGGTTGGAACCCCGGAAAAGG
22._RUQ_553
AAAAGGGGGGTTGGAACCCCGGAAAAGG
23._SIAL_98_Fld#_84_Plt#_5
AAAAGGGGGGTTGGAACCAAGGAAAACC
24._GC-08-63-1-85
AAGGGGGGGGTTGGAGCCCCGGAAAACC
25._RUQ_1694
AAAAGGGGGGTTGGAGCCCCGGAAAACC
26._GC-08-254-8-22
AAAAGGGGGGTTGGAACCACGGAAAACG
 5758596061626364656667686970
_Input profile
AAGGAAAAAGAAACGGAAAAACAAAACC
1._SIAL_44_Fld#_66_Plt#_5
AAGGAAAAGGAACCGGAAAAAAAAAACC
2._GC-08-90-2-13
AAGGAAAAGGAACCGGAAAAAAAAAACC
3._RUQ_436
AAGGAAAAGGAACCGGAAAAAAAAAACC
4._RUQ_44
AAGGAAAAGGAACCGGAAAAAAAAAACC
5._MITC-000366
AAGGAAAAGGAACCGGAAAAAAAAAACC
6._MITC-000412
AAGGAAAAGGAACCGGAAAAAAAAAACC
7._MITC-000717
AAGGAAAAGGAACCGGAAAAAAAAAACC
8._AMELONADO_[VAR]_Fld#_14_Plt#_5
AAGGAAAAGGAACCGGAAAAAAAAAACC
9._CC_37_Fld#_69B_Plt#_4
ACGGAAAAGGAACCGGAAAAACAAAACC
10._SIAL_42_Fld#_146_Plt#_6
AAGGAAAAGGAACCGGAAAAAAAAAACC
11._SIC_7_Fld#_68_Plt#_6
ACGGAAAAGGAACCGGAAAAACAAAACC
12._GC-01-56-3-11
AAGGAAAAGGAACCGGAAAAAAAAAACC
13._GC-01-39-2-16
ACGGAAAAGGAACCGGAAAAAAAAAACC
14._RUQ_1719
AAGGAGAAAGAACCGGAAAAAAAAAACC
15._RUQ_1715
AAGGGGAAGGAACCGGAAAAAAAAAACC
16._MITC-000114
AAGGGGAAGGAACCGGAAAAAAAAAACC
17._GC-01-41-2-18
ACGGAAAAGGAACCGGAAAAACAAAACC
18._GC-01-48-3-3
ACGGAAAAGGAACCGGAAAAACAAAACC
19._GC-01-52-3-7
AAGGAAAAGGAACCGGAAAAAAAAAACC
20._GC-08-71-1-93
AAGGAAAAGGAACCGGAAAAAAAAAACC
21._RUQ_1535
AAGGAAAAGGAACCGGAAAAAAAAAACC
22._RUQ_553
AAGGAAAAGGAACCGGAAAAAAAAAACC
23._SIAL_98_Fld#_84_Plt#_5
CCGGAAAAGGAACCGGAAAAAAAAAACC
24._GC-08-63-1-85
AAGGAAAAGGAACCGGAAAAACAAAACC
25._RUQ_1694
AAGGAAAAGGAACCGGAAAAACAAAACC
26._GC-08-254-8-22
ACGGAAAAGGAACCGGAAAAAAAAAACC
 717273747576777879808182  
_Input profile
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
1._SIAL_44_Fld#_66_Plt#_5
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
2._GC-08-90-2-13
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
3._RUQ_436
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
4._RUQ_44
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
5._MITC-000366
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
6._MITC-000412
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
7._MITC-000717
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
8._AMELONADO_[VAR]_Fld#_14_Plt#_5
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
9._CC_37_Fld#_69B_Plt#_4
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
10._SIAL_42_Fld#_146_Plt#_6
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
11._SIC_7_Fld#_68_Plt#_6
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
12._GC-01-56-3-11
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
13._GC-01-39-2-16
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
14._RUQ_1719
GGCCGGGGAGCCAAGGGGAAAAGGX_XX_X
15._RUQ_1715
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
16._MITC-000114
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
17._GC-01-41-2-18
GGCCGGGGAACCAACGGGAAAAGGX_XX_X
18._GC-01-48-3-3
GGCCGGGGAACCAACGGGAAAAGGX_XX_X
19._GC-01-52-3-7
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
20._GC-08-71-1-93
GGCCGGGGAACCAACCGGAAAAGGX_XX_X
21._RUQ_1535
GGCCGGGGGGCCAAGGGGAAAAAAX_XX_X
22._RUQ_553
GGCCGGGGGGCCAAGGGGAAAAAAX_XX_X
23._SIAL_98_Fld#_84_Plt#_5
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
24._GC-08-63-1-85
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
25._RUQ_1694
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
26._GC-08-254-8-22
GGCCGGGGAACCAACGGGAAAAGGX_XX_X

Input profile: EEG_8 RUQ_1726

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._SIAL_44 SIAL_44_Fld#_66_Plt#_5

93.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 66, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

2._BE_10 GC-08-90-2-13

93.3 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

3._B_12_/2_[POU] RUQ_436

93.3 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._SC_9_[UNK] RUQ_44

93.3 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._AMELONADO_[VAR] MITC-000366

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

6._LCT_EEN_46 MITC-000412

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

7._UF_273 MITC-000717

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

8._AMELONADO_[VAR] AMELONADO_[VAR]_Fld#_14_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 14, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

9._CC_37 CC_37_Fld#_69B_Plt#_4

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 69B, Tree: 4
 Mars, 2018

10._SIAL_42 SIAL_42_Fld#_146_Plt#_6

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 146, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

11._SIC_7 SIC_7_Fld#_68_Plt#_6

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 68, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

12._GU_207 GC-01-56-3-11

93.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

13._SIAL_70 GC-01-39-2-16

92.1 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 12, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._BE_5 RUQ_1719

92.1 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

15._MATINA_1_/6 RUQ_1715

92.1 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._MATINA_1_/6 MITC-000114

92.1 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

17._SIAL_169 GC-01-41-2-18

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._SIAL_505 GC-01-48-3-3

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 3, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._SIAL_88 GC-01-52-3-7

91.5 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._JA_9_/37_[POU] GC-08-71-1-93

91.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._FSC_13 RUQ_1535

90.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._GDL_3 RUQ_553

90.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._SIAL_98 SIAL_98_Fld#_84_Plt#_5

90.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 84, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

24._GU_300 GC-08-63-1-85

90.2 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 85, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

25._BE_8 RUQ_1694

90.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._EEG_27 GC-08-254-8-22

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998