SNP Profiles matching GU 241 /P

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 Key

 1234567891011121314
_Input profile
CCACAGCCAAGGGGCCAAGGGGAAGGAA
1._GC-08-266-8-38
CCACAGCCAAGGGGCCAAGGGGAAGGAA
2._RUQ_1431
CCACAGCCAAGGGGCCAAGGGGAAGGAA
3._RUQ_222
CCAAAACCAAGGGGCCAAGGGGAAGGAA
4._GC-08-052-1-63
CCAAAACCAAGGGGCCAAGGGGAAGGAA
5._GC-01-75-4-11
CCAAAACCAAGGGGCCAAGGGGAAGGAA
6._RUQ_1543
CCACGGCCAAGGGGCCAAGGGGAAGGAA
7._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
8._GC-01-116-6-13
CCACGGCCAAGGGGCCAAGGGGAAGGAA
9._GC-01-78-4-14
CCACAACCAAGGGGCCAAGGGGAAGGAA
10._GC-01-74-4-10
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
11._RUQ_188
CCACAACCAAGGGGCCAAGGGGAAGGAA
12._MITC-000670
CCACGGCCAAGGGGCCAAGGGGAAGGAA
13._GU_221_H_Fld#_162_Plt#_1
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
14._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
15._GC-01-76-4-12
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
16._RUQ_771
CCACAGCCAAGGGGCCAAGGGGAAGGAA
17._GC-04-23-2-5
CCAAAACCAAGGGGCCAAGGGGAAGGAA
18._RUQ_768
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGAAGGCGAGAAAA
1._GC-08-266-8-38
AAAAAAAACCGGAAGGAAGGCGAGAAAA
2._RUQ_1431
AAAAAAAACCGGAAGGAAGGCGAGAAAA
3._RUQ_222
AAAAAAAACCGGAAGGAAGGCCAGAAAA
4._GC-08-052-1-63
AAAAAAAGCCGGAAGGAAGGCGGGAAAA
5._GC-01-75-4-11
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
6._RUQ_1543
AAAAAAAG_GGAAGGAAGGCGGGAAAA
7._RUQ_200
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
8._GC-01-116-6-13
AAAAAAAA_GGAAGGAAGGCGGGAAAA
9._GC-01-78-4-14
AAAAAAAA_GGAAGGAAGGCGGGAAAA
10._GC-01-74-4-10
AAAAAAAG_GGAAGGAAGGCCAGAAAA
11._RUQ_188
AAAAAAAACCGGAAGGAAGGCGGGAAAA
12._MITC-000670
AAAAAAAACCGGAAGGAAGGCGGGAAAA
13._GU_221_H_Fld#_162_Plt#_1
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
14._GC-01-73-4-9
AAAAAAAGCCGGAAGGAAGGCGGGAAAA
15._GC-01-76-4-12
AAAAAAAG_GGAAGGAAGGCGGGAAAA
16._RUQ_771
AAAAAAAACCGGAAGGAAGGGGGGAAAA
17._GC-04-23-2-5
AAAAAAGGACGGAAGGAAGGCCGGAAAA
18._RUQ_768
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATAGGG
1._GC-08-266-8-38
GGTTGGAAGGGGGGGGGGCCTTATAGGG
2._RUQ_1431
GGTTGGAAGGGGGGGGGGCCTTATAGGG
3._RUQ_222
GGTTGGAAGGGGGGGGGGCCTTATGGGG
4._GC-08-052-1-63
GGTTGGAAGGGGGGGGGGCCTTATGGGG
5._GC-01-75-4-11
GGTTGGAAGGGGGGGGGGCCTTATGGGG
6._RUQ_1543
GGTTGGAAGGGGGGGGGGCCTTATAGGG
7._RUQ_200
GGTTGGAAGGGGGGGGGGCCTTATGGGG
8._GC-01-116-6-13
GGTTGGAAGGGGGGGGGG_TTATGGGG
9._GC-01-78-4-14
GGTTGGAAGGGGGGGGGGCCTTATGGGG
10._GC-01-74-4-10
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
11._RUQ_188
GGTTGGAAGGGGGGGGGGCCTTATGGGG
12._MITC-000670
GGTTGGAAGGGGGGGGGGCCTTATGGGG
13._GU_221_H_Fld#_162_Plt#_1
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
14._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
15._GC-01-76-4-12
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
16._RUQ_771
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
17._GC-04-23-2-5
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
18._RUQ_768
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GC-08-266-8-38
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._RUQ_1431
AAAAGGGGGGTTGGAACCAAGGCCGGCC
3._RUQ_222
AAAAGGGGGGTTGGAACCAAGGCCGGCC
4._GC-08-052-1-63
AAAAGGGGGGTTGGAACCAAGGCCGGCC
5._GC-01-75-4-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
6._RUQ_1543
AAAGGGGGGGTTGGAACCAAGGCCGGCC
7._RUQ_200
AAAAGGGGGGTTGGAACCAAGGCCGGCC
8._GC-01-116-6-13
AAAAGGGGGGTTGGAACCAAGGCCGGCC
9._GC-01-78-4-14
AAAGGGGGGGTTGGAACCAAGGCCGGCC
10._GC-01-74-4-10
AAAGGGGGGGTTGGAACCAAGGCCGGCC
11._RUQ_188
AAAGGGGGGGTTGGAACCAAGGCCGGCC
12._MITC-000670
AAAAGGGGGGTTGGAACCAAGGCCGGCC
13._GU_221_H_Fld#_162_Plt#_1
AAAGGGGGGGTTGGAACCAAGGCCGGCC
14._GC-01-73-4-9
AAAAGGGGGGTTGGAACCAAGGCCGGCC
15._GC-01-76-4-12
AAAAGGGGGGTTGGAACCAAGGCCGGCC
16._RUQ_771
AAAAGGGGGGTTGGAACCAAGGCCGGCC
17._GC-04-23-2-5
AAAAGGGGGGTTGGAACCAAGGCCGGCC
18._RUQ_768
AAAAGGGGGGTTGGAACCAAGGCCGGCC
 5758596061626364656667686970
_Input profile
ACGGGGGGAGAACCAAAAACAAAAAACC
1._GC-08-266-8-38
ACGGGGGGAGAACCAAAAACAAAAAACC
2._RUQ_1431
ACGGGGGGAGAACCAAAAACAAAAAACC
3._RUQ_222
CCGGGGGGAGAACCAAAAACAAAAAACC
4._GC-08-052-1-63
CCGGGGGGAGAACCAAAAACAAAAAACC
5._GC-01-75-4-11
ACGGGGGGAGAACCAAAAAAAAAAAACC
6._RUQ_1543
AAGGGGAGAAAACCAAAAACAAAAAACC
7._RUQ_200
ACGGGGGGAGAACCAAAAAAAAAAAACC
8._GC-01-116-6-13
ACGGGGGGGGAACCAAAACCAAAAAACC
9._GC-01-78-4-14
ACGGGGGGGGAACCAAAACCAAAAAACC
10._GC-01-74-4-10
CCGGGGGGAGAACCAAAAAAAAAAAACC
11._RUQ_188
ACGGGGGGGGAACCAAAACCAAAAAACC
12._MITC-000670
ACGGGGGGGGAACCAAAACCAAAAAACC
13._GU_221_H_Fld#_162_Plt#_1
CCGGGGGGAGAACCAAAAAAAAAAAACC
14._GC-01-73-4-9
ACGGGGGGGGAACCAAAACCAAAAAACC
15._GC-01-76-4-12
ACGGGGGGGGAACCAAAACCAAAAAACC
16._RUQ_771
ACGGGGGGAAAACCAAAACCAAAAAACC
17._GC-04-23-2-5
ACGGGGGGAGAACCAAAAACAAAAAACC
18._RUQ_768
CCGGGGAGAGAACCAAAACCAAAAAACC
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
1._GC-08-266-8-38
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
2._RUQ_1431
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
3._RUQ_222
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
4._GC-08-052-1-63
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
5._GC-01-75-4-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
6._RUQ_1543
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
7._RUQ_200
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
8._GC-01-116-6-13
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
9._GC-01-78-4-14
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
10._GC-01-74-4-10
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
11._RUQ_188
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
12._MITC-000670
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
13._GU_221_H_Fld#_162_Plt#_1
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
14._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
15._GC-01-76-4-12
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
16._RUQ_771
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
17._GC-04-23-2-5
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
18._RUQ_768
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X

Input profile: GU_241_/P MITC-000612

 
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USDA-SHRS, United States of America
 Mars, 2018

1._GU_241 GC-08-266-8-38

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_241_/P RUQ_1431

identical
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._GU_147_/H RUQ_222

93.3 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._GU_335 GC-08-052-1-63

92.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 63, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._GU_221_/C GC-01-75-4-11

92.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._GU_183_/G RUQ_1543

92 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._GU_221_/C RUQ_200

92.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

8._GU_133_/C GC-01-116-6-13

91.3 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

9._GU_154_/C GC-01-78-4-14

91.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._GU_221_/H GC-01-74-4-10

91.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

11._GU_125_/C RUQ_188

91.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

12._GU_133_/C MITC-000670

91.5 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

13._GU_221_/H GU_221_H_Fld#_162_Plt#_1

91.5 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

14._GU_144_/C GC-01-73-4-9

90.9 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

15._GU_296_/H GC-01-76-4-12

90.7 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

16._GU_277_/G RUQ_771

90.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._GU_353 GC-04-23-2-5

90.2 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 2, Rep: 5, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._GU_219_/F RUQ_768

90.2 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998