SNP Profiles matching NA 26

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 Key

 1234567891011121314
_Input profile
CCACAAACAAAGAGCCAAGGGGAAAGAC
1._RUQ_1230
CCACAAACAAAGAGCCAAGGGGAAAGAC
2._RUQ_1064
CCACAAAAAAGGAGCCAAGGGGAAAAAC
3._RUQ_1730
CCACAAAAAAGGAGCCAAGGGGAAAAAC
4._RUQ_1089
CCACAAACAAAGAGCCAAGGGGAAAACC
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGACAACGAACCAG
1._RUQ_1230
AAAAAAAACCGGAAGGACAACGAACCAG
2._RUQ_1064
AAAAAAAG__GGAAGGACAAGGAACCGG
3._RUQ_1730
AAAAAAAGACGGAAGGACAAGGAACCGG
4._RUQ_1089
AAAAAAAA__GGAAGGACAAGGAACCAG
 2930313233343536373839404142
_Input profile
GGATGGAACGAGGGAGGGCCTTTTGGGG
1._RUQ_1230
GGATGGAACGAGGGAGGGCCTTTTGGGG
2._RUQ_1064
GGATGGAACGAGGGAGGGCCTTATGGGG
3._RUQ_1730
GGATGGAACGAGGGAGGGCCTTATGGGG
4._RUQ_1089
GGAAGGACGGAGGGAGGGCCTTTTGGGG
 4344454647484950515253545556
_Input profile
ATAGGGGGGGAAGGAGAACCAACCGGGG
1._RUQ_1230
ATAGGGGGGGAAGGAGAACCAACCGGGG
2._RUQ_1064
ATAGGGGGGGAAGGAAAACCAACCGGGG
3._RUQ_1730
ATAGGGGGGGAAGGAAAACCAACCGGGG
4._RUQ_1089
ATAAGGGGGGAAGGAAAACCAAACGGGG
 5758596061626364656667686970
_Input profile
ACGGGGGGAAAACCGGAAAAACAACCCC
1._RUQ_1230
ACGGGGGGAAAACCGGAAAAACAACCCC
2._RUQ_1064
AAGGGGAGAAAACCGGAAAAACAAACCC
3._RUQ_1730
AAGGGGAGAAAACCGGAAAAACAAACCC
4._RUQ_1089
AAGGGGGGAAAACCGGAAAAACAAACCC
 717273747576777879808182  
_Input profile
GGGGGGGGGGCCAGGGGGAAAGAGX_XX_X
1._RUQ_1230
GGGGGGGGGGCCAGGGGGAAAGAGX_XX_X
2._RUQ_1064
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
3._RUQ_1730
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
4._RUQ_1089
GGGGGGGGGGCCAGGGGGATAAAGX_XX_X

Input profile: NA_26 MITC-000034

 
USDA-SHRS, United States of America
 Mars, 2018

1._NA_26 RUQ_1230

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._SCA_9 RUQ_1064

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._SCA_10 RUQ_1730

92.1 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._ICS_39 RUQ_1089

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998