SNP Profiles matching EET_272

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 Key

 1234567891011121314
_Input profile
CCACAACCAAAGGGCCAAGGGGAAAACC
1._RUQ_6
CCACAACCAAAGGGCCAAGGGGAAAACC
2._RUQ_24
CCACAACCAAAGGGCCAAGGGGAAAACC
3._MITC-000106
CCACAACCAAAGGGCCAAGGGGAAAACC
4._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
CCACAACCAAAGGGCCAAGGGGAAAACC
5._RUQ_1231
CCCCAACCAAGGGGCCAAGGGGAAAACC
6._RUQ_1651
CCACAAACAAAGGGCCAAGGGGAAAACC
7._RUQ_1235
CCACAACCAAGGGGCCAAGGGGAAAACC
8._RUQ_1089
CCACAAACAAAGAGCCAAGGGGAAAACC
9._RUQ_1064
CCACAAAAAAGGAGCCAAGGGGAAAAAC
 1516171819202122232425262728
_Input profile
AAAAAAAAAAGGAAGGACAAGGAACCAG
1._RUQ_6
AAAAAAAAAAGGAAGGACAAGGAACCAG
2._RUQ_24
AAAAAAAAAAGGAAGGACAAGGAACCAG
3._MITC-000106
AAAAAAAAAAGGAAGGACAAGGAACCAG
4._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
AAAAAAAAAAGGAAGGACAAGGAACCAG
5._RUQ_1231
AAAAAAAAAAGGAAGGACAAGGAACCGG
6._RUQ_1651
AAAAAAAAAAGGAAGGACAAGGAACCAG
7._RUQ_1235
AAAAAAAAAAGGAAGGCCAAGGAACCAA
8._RUQ_1089
AAAAAAAA__GGAAGGACAAGGAACCAG
9._RUQ_1064
AAAAAAAG__GGAAGGACAAGGAACCGG
 2930313233343536373839404142
_Input profile
GGATGGAAGGAAGGAGGGCCTTTTAGGG
1._RUQ_6
GGATGGAAGGAAGGAGGGCCTTTTAGGG
2._RUQ_24
GGATGGAAGGAAGGAGGGCCTTTTAGGG
3._MITC-000106
GGATGGAAGGAAGGAGGGCCTTTTAGGG
4._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
GGATGGAAGGAAGGAGGGCCTTTTAGGG
5._RUQ_1231
GGTTGGAAGGAAGGAGGGCCTTTTAGGG
6._RUQ_1651
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
7._RUQ_1235
GGAAGGAAGGAAGGAAGGCCTTTTAGGG
8._RUQ_1089
GGAAGGACGGAGGGAGGGCCTTTTGGGG
9._RUQ_1064
GGATGGAACGAGGGAGGGCCTTATGGGG
 4344454647484950515253545556
_Input profile
AAAGGGGGGGAAGGAAAACCGGACGGGG
1._RUQ_6
AAAGGGGGGGAAGGAAAACCGGACGGGG
2._RUQ_24
AAAGGGGGGGAAGGAAAACCGGACGGGG
3._MITC-000106
AAAGGGGGGGAAGGAAAACCGGACGGGG
4._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
AAAGGGGGGGAAGGAAAACCGGACGGGG
5._RUQ_1231
AAAGGGGGGGAAGGAAAACCGGACGGGG
6._RUQ_1651
AAGGGGGGGGAAGGAAAACCGGACGGGG
7._RUQ_1235
AAAGGGGGGGAAGGAAAACCGGCCGGGG
8._RUQ_1089
ATAAGGGGGGAAGGAAAACCAAACGGGG
9._RUQ_1064
ATAGGGGGGGAAGGAAAACCAACCGGGG
 5758596061626364656667686970
_Input profile
AAGGGGAGAAAACCGGAAAACCAAACCC
1._RUQ_6
AAGGGGAGAAAACCGGAAAACCAAACCC
2._RUQ_24
AAGGGGAGAAAACCGGAAAACCAAACCC
3._MITC-000106
AAGGGGAGAAAACCGGAAAACCAAACCC
4._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
AAGGGGAGAAAACCGGAAAACCAAACCC
5._RUQ_1231
AAGGGGAGAAAACCGGAAAACCAAACCC
6._RUQ_1651
AAGGGGAGAAAACCGGAAAACCAACCCC
7._RUQ_1235
AAGGGGAAAAAACCGGAAAACCAAACCC
8._RUQ_1089
AAGGGGGGAAAACCGGAAAAACAAACCC
9._RUQ_1064
AAGGGGAGAAAACCGGAAAAACAAACCC
 717273747576777879808182  
_Input profile
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
1._RUQ_6
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
2._RUQ_24
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
3._MITC-000106
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
4._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
5._RUQ_1231
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
6._RUQ_1651
GGCGAGGGGGCCGGGGGGAAAGGGX_XX_X
7._RUQ_1235
GGGGGGGGGGCCGGGGGGAAAGAGX_XX_X
8._RUQ_1089
GGGGGGGGGGCCAGGGGGATAAAGX_XX_X
9._RUQ_1064
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X

Input profile: EET_272_[ECU] MITC-000381

 
USDA-SHRS, United States of America
 Mars, 2018

1._EET_272_[ECU] RUQ_6

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._POUND_7_/B RUQ_24

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._POUND_7 MITC-000106

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

4._POUND_7_/C Pound_7/C_Fld_6B_Fld#_176_Plt#_2

identical
82 shared markers

USDA-TARS, United States of America
Location: Field: 176, Tree: 2
 Mars, 2018

5._LZ_8 RUQ_1231

97.6 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._GEBP_450_/A-F_[ADI] RUQ_1651

94.5 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._TRD_44 RUQ_1235

94.5 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

8._ICS_39 RUQ_1089

90.7 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

9._SCA_9 RUQ_1064

90.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998