SNP Profiles matching JA 1 /19 [POU]

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 Key

 1234567891011121314
_Input profile
CTACCTCCGGTTATCCCTAGGTAACTAA
1._RUQ_456
CTACCTCCGGTTTTCCCCAGGTAACTAC
2._RUQ_1539
CTACCTCCGGTTATCCCTAGGTAACTAA
3._RUQ_791
CTACCTCCGGTTATCCTTAGGTAACTAA
 1516171819202122232425262728
_Input profile
AGAACTACCTACAACGAACCCTCTAACC
1._RUQ_456
GGACCTACCTACAACGAACCCTCTAACC
2._RUQ_1539
AGACCTACCTACAACGAACCCTCTAACC
3._RUQ_791
GGACCTACCTACAACGAACCCTCTAACC
 2930313233343536373839404142
_Input profile
AGCGTTGGAGCTTTCCAACTGGAGCGAA
1._RUQ_456
AGCGTTGGAGTTTTCCAACTGGAGCCAA
2._RUQ_1539
GGCGCTGTAGCTTTACAACTGGAGCCAG
3._RUQ_791
AGCGTTGGAGCTTTACAA_GGAGCCAG
 4344454647484950515253545556
_Input profile
CTCTATCTAGCTCTGTAAGTGTTTAGAG
1._RUQ_456
CTCTAACCAGCTCTGTAAGTGTTTAGAG
2._RUQ_1539
CTCTAACTAGCTCTGTAAGTGTTTAGAG
3._RUQ_791
CTCTAACCAGTTCTGTAAGTGGTTAGAG
 575859           
_Input profile
CGCTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_456
CGCTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1539
CGTTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_791
CGCTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: JA_1_/19_[POU] RUQ_352

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._JA_10_/12_[POU] RUQ_456

92.4 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._JA_5_/5_[POU] RUQ_1539

92.4 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._EET_59_[ECU] RUQ_791

91.4 %
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527