SNP Profiles matching ICS 1

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 Key

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_Input profile
CCTTAAAATTCCTTCCCGCGAGGTGGCT
1._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
2._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
3._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
4._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
5._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
6._GC-04-053-3-17
GGTTAAAATTCCTTCCCGCGAAGTGGCT
7._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
8._RUQ_847
GGTTAAAATT____CCCGCG______CT
9._RUQ_817
GGTTAAAATT____CCCGCG______CT
10._ICS_1
GG______TT__TTCC__CG________
11._ICS_1
GG______TT__TTCC__CG________
12._ICS_1
GG______TT__TTCC__CG________
13._ICS_1
GG______TT__TTCC__CG________
14._ICS_1
GG______TT__TTCC__CG________
15._PA_70_[PER]
GG______TT__TTCC__CG________
16._RUQ_847
GG______TT__TTCC__CG________
17._RUQ_847
GG______TT__TTCC__CG________
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_Input profile
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
1._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
2._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
3._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
4._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
5._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
6._GC-04-053-3-17
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
7._NA
AC__CGCTATAAAGCGAAAGCCAAX_XX_X
8._RUQ_847
AACCCG__ATAAAGCGAAAGCCAAX_XX_X
9._RUQ_817
AACCCG__ATAAAGCGAAAGCCAAX_XX_X
10._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
11._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
12._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
13._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
14._ICS_1
ACCC____AT__AGCGAA__CCAAX_XX_X
15._PA_70_[PER]
ACCC____AT__AGCGAA__CCAAX_XX_X
16._RUQ_847
ACCC____AT__AGCGAA__CCAAX_XX_X
17._RUQ_847
ACCC____AT__AGCGAA__CCAAX_XX_X

Input profile: ICS_1 RUQ_847

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._ICS_1 NA

94.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._ICS_1 NA

94.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._ICS_1 NA

94.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._ICS_1 NA

94.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._ICS_1 NA

94.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._PA_70_[PER] GC-04-053-3-17

94.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

7._ICS_1 NA

94 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._ICS_1 RUQ_847

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._ICS_5 RUQ_817

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

11._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

12._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

13._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

14._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._PA_70_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._ICS_1 RUQ_847

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_1 RUQ_847

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144