SNP Profiles of ICS 1   View Data

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 1234567891011121314
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
2._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
3._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
4._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
5._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
6._ICS_1
AAAATTAC________TTCTGG__CC__
7._ICS_1
AAAATTAC________TTCTGG__CC__
8._ICS_1
AAAATTAC________TTCTGG__CC__
9._ICS_1
AAAATTAC________TTCTGG__CC__
10._ICS_1
AAAATTAC________TTCTGG__CC__
11._ICS_1
AAAATTAC________TTCTGG__CC__
12._ICS_1
AAAATTAC________TTCTGG__CC__
13._RUQ_847
AAAATTAC________TTCTGG__CC__
14._RUQ_847
____TTAA____CT__TT____CTCC__
15._RUQ_847
AAAACTAC________TTCTGG__CC__
16._RUQ_847
______AC________TT______CC__
17._RUQ_847B
______AC____CT______________
18._RUQ_847
______AC____CT______________
19._ICS_1
AAACCTCC________CCCCGG__CC__
20._ICS1
______CC________CC______CT__
21._RUQ_847
AAAA__ACGGAG__GGAA__GGAGGGGG
22._MITC-000297
AAAA__ACGGAG__GGAA__GGAGGGGG
23._ICS_1_Fld#_73_Plt#_2
AAAA__ACGGAG__GGAA__GGAGGGGG
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._ICS_1
______AA____GG________ATAT__
7._ICS_1
______AA____GG________ATAT__
8._ICS_1
______AA____GG________ATAT__
9._ICS_1
______AA____GG________ATAT__
10._ICS_1
______AA____GG________ATAT__
11._ICS_1
______AA____GG________ATAT__
12._ICS_1
______AA____GG________ATAT__
13._RUQ_847
______AA____GG________ATAT__
14._RUQ_847
__________CG________AG__ATCG
15._RUQ_847
______AA____GG________ATAT__
16._RUQ_847
____AG____CG__CT____AG__ATCG
17._RUQ_847B
______AATT__________________
18._RUQ_847
______AATT__________________
19._ICS_1
______GG____CG________ATAA__
20._ICS1
____AG____GG__CT____AG__TTGG
21._RUQ_847
ATCCAGAACC__GGAGAGAAAGATATCG
22._MITC-000297
ATCCAGAACC__GGAGAGAAAGATATCG
23._ICS_1_Fld#_73_Plt#_2
ATCCAGAACC__GGAGAGAAAGATATCG
 2930313233343536373839404142
_Input profile
CGAACTGGAAAAAGGTGGGTAACTAACC
1._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
2._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
3._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
4._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
5._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
6._ICS_1
CGAA________AGGT____AA______
7._ICS_1
CGAA________AGGT____AA______
8._ICS_1
CGAA________AGGT____AA______
9._ICS_1
CGAA________AGGT____AA______
10._ICS_1
CGAA________AGGT____AA______
11._ICS_1
CGAA________AGGT____AA______
12._ICS_1
__AA________AGGT____AA______
13._RUQ_847
CGAA________AGGT____AG______
14._RUQ_847
CG______AAAAAGGT____AACT____
15._RUQ_847
CGAA________AGGT____AG______
16._RUQ_847
CG______AA________GT__CT____
17._RUQ_847B
CG__________AG________CT____
18._RUQ_847
CG__________AG________CT____
19._ICS_1
GGAA________AGGT____GG______
20._ICS1
CG______GG________GT__CC____
21._RUQ_847
CGAAAGCCAAAAAGACCCACAAAGAAGG
22._MITC-000297
CGAAAGCCAAAAAGACCCACAAAGAAGG
23._ICS_1_Fld#_73_Plt#_2
CGAAAGCCAAAAAGACCCACAAAGAAGG
 4344454647484950515253545556
_Input profile
GTAACCGGAGAGTTCCGGGGGTTTCCTT
1._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
2._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
3._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
4._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
5._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
6._ICS_1
____CC__________________CCTT
7._ICS_1
____CC__________________CCTT
8._ICS_1
____CC__________________CCTT
9._ICS_1
____CC__________________CCTT
10._ICS_1
____CC__________________CCTT
11._ICS_1
____CC__________________CCTT
12._ICS_1
____CC__________________CCTT
13._RUQ_847
____CC__________________CCTT
14._RUQ_847
GTAA____AG____________CTCC__
15._RUQ_847
____CC__________________CCTT
16._RUQ_847
__AA__GG________________CC__
17._RUQ_847B
________AG__________________
18._RUQ_847
________AG__________________
19._ICS_1
____TT__________________CCCT
20._ICS1
__TT__AG________________CT__
21._RUQ_847
AC__GG__AGAGAA__GGGGACAGGGAA
22._MITC-000297
AC__GG__AGAGAA__GGGGACAGGGAA
23._ICS_1_Fld#_73_Plt#_2
AC__GG__AGAGAA__GGGGACAGGGAA
 5758596061626364656667686970
_Input profile
GTAACGTTCTAAGGAAAAAGTTGTGGCT
1._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
2._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
3._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
4._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
5._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
6._ICS_1
____CG__CTAAGG__AAAGTTGT____
7._ICS_1
____CG__CTAAGG__AAAGTTGT____
8._ICS_1
____CG__CTAAGG__AAAGTTGT____
9._ICS_1
____CG__CTAAGG__AAAGTTGT____
10._ICS_1
____CG__CTAAGG__AAAGTTGT____
11._ICS_1
____CG__CTAAGG__AAAGTTGT____
12._ICS_1
____CG__CTAAGG__AAAGTTGT____
13._RUQ_847
____CG__CTAAGG__AAAGTTGT____
14._RUQ_847
GT__CGTTCTAA__AAAAAGTTGTGG__
15._RUQ_847
____CG__CTAAGG__AAAGTTGT____
16._RUQ_847
____CGTT__AA__AAAAAG________
17._RUQ_847B
__AA____________AAAG__GTGG__
18._RUQ_847
__AA____________AAAG__GTGG__
19._ICS_1
____CC__CTAAGG__ACAAGGGG____
20._ICS1
____CGCT__AC__AGCCAG________
21._RUQ_847
ACAACGAAAGAAGGAAAAAGAAACGG__
22._MITC-000297
ACAACGAAAGAAGGAAAAAGAAACGG__
23._ICS_1_Fld#_73_Plt#_2
ACAACGAAAGAAGGAAAAAGAAACGG__
 7172737475767778798081828384
_Input profile
CCGGTTACGGCCAAAACCGGCTAAACTT
1._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
2._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
3._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
4._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
5._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
6._ICS_1
__GGTT__________CCGG______TT
7._ICS_1
__GGTT__________CCGG______TT
8._ICS_1
__GGTT__________CCGG______TT
9._ICS_1
__GGTT__________CCGG______TT
10._ICS_1
__GGTT__________CCGG______TT
11._ICS_1
__GGTT__________CCGG______TT
12._ICS_1
__GGTT__________CCGG______TT
13._RUQ_847
__GGTT__________CCGG______TT
14._RUQ_847
________________CCGG____ACTT
15._RUQ_847
__GGTT__________CCGG______CT
16._RUQ_847
CC________________CC________
17._RUQ_847B
__GG____________ACGG____AC__
18._RUQ_847
__GG____________ACGG____AC__
19._ICS_1
__AATT__________AAGG______TT
20._ICS1
CC________________CG________
21._RUQ_847
____AAACGGCCAA__CCCCAGAAACAA
22._MITC-000297
____AAACGGCCAA__CCCCAGAAACAA
23._ICS_1_Fld#_73_Plt#_2
____AAACGGCCAA__CCCCAGAAACAA
 85868788899091929394    
_Input profile
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
1._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
2._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
3._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
4._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
5._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
6._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
7._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
8._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
9._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
10._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
11._ICS_1
TTTT__AG__CTTTTT____X_XX_XX_XX_X
12._ICS_1
TTTT______CTTTTT____X_XX_XX_XX_X
13._RUQ_847
TTTT__AG__CTTTTT____X_XX_XX_XX_X
14._RUQ_847
______AG__CTTT______X_XX_XX_XX_X
15._RUQ_847
TTCT__AG__CTTTTT____X_XX_XX_XX_X
16._RUQ_847
TT__________________X_XX_XX_XX_X
17._RUQ_847B
__TT____CT__TT______X_XX_XX_XX_X
18._RUQ_847
__TT____CT__TT______X_XX_XX_XX_X
19._ICS_1
TTCC__AG__CCTTTT____X_XX_XX_XX_X
20._ICS1
CT__________________X_XX_XX_XX_X
21._RUQ_847
AA__AA____AGAAAATTGGX_XX_XX_XX_X
22._MITC-000297
AA__AA____AGAAAATTGGX_XX_XX_XX_X
23._ICS_1_Fld#_73_Plt#_2
AA__AA____AGAAAATTGGX_XX_XX_XX_X

Input profile: ICS_1 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

7._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

8._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

9._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

10._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

11._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._ICS_1

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

13._ICS_1 RUQ_847

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._ICS_1 RUQ_847

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._ICS_1 RUQ_847

94 %
25 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

17._ICS_1 RUQ_847B

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

18._ICS_1 RUQ_847

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._ICS_1

62.8 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._ICS_1 ICS1

56 %
25 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_1 RUQ_847

53.1 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._ICS_1 MITC-000297

53.1 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

23._ICS_1 ICS_1_Fld#_73_Plt#_2

53.1 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240