SNP Profiles of PA 175 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTACGGGGCCCCCCCCGGTTCCTT
1._PA_175_[PER]___
AAACCTACGGGGCCCCCCCCGGTTCCTT
2._PA_175_[PER]___
AAACCTACGGGGCCCCCCCCGGTTCCTT
3._PA_175_[PER]___
AAACCTACGGGGCCCCCCCCGGTTCCTT
4._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
5._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
6._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
7._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
8._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
9._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
10._PA_175_[PER]___
____CTAC____CT__CC____TTCC__
11._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
12._PA_175_[PER]___
______AC____CT______________
13._PA_175_[PER]___
AAAC__ACGGGG__GGGG__GGAAGGAA
14._PA_175_[PER]___
AAAC__ACGGGG__GGGG__GGAAGGAA
15._PA_175_[PER]___
AAAC__ACGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAGCGCCCGCTAATTGGATAACCGG
1._PA_175_[PER]___
AACCAGCGCCCGCTAATTGGATAACCGG
2._PA_175_[PER]___
AACCAGCGCCCGCTAATTGGATAACCGG
3._PA_175_[PER]___
AACCAGCGCCCGCTAATTGGATAACCGG
4._PA_175_[PER]___
____AG____CG________ATAA__GG
5._PA_175_[PER]___
____AG____CG________ATAA__GG
6._PA_175_[PER]___
____AG____CG________ATAA__GG
7._PA_175_[PER]___
____AG____CG________ATAA__GG
8._PA_175_[PER]___
____AG____CG________ATAA__GG
9._PA_175_[PER]___
____AG____CG________ATAA__GG
10._PA_175_[PER]___
________CC________GG__AACCGG
11._PA_175_[PER]___
____AGTTCCCG________ATAA__GG
12._PA_175_[PER]___
____AGTT__________________GG
13._PA_175_[PER]___
TTCCAGCG__CGAGGGAAGGATAAGGCC
14._PA_175_[PER]___
TTCCAGCG__CGAGGGAAGGATAAGGCC
15._PA_175_[PER]___
TTCCAGCG__CGAGGGAAGGATAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGCGCCAAGGGGTTGGTTGGCC
1._PA_175_[PER]___
AATTGTGGCGCCAAGGGGTTGGTTGGCC
2._PA_175_[PER]___
AATTGTGGCGCCAAGGGGTTGGTTGGCC
3._PA_175_[PER]___
AATTGTGGCGCCAAGG__TTGGTTGGCC
4._PA_175_[PER]___
AA______CG__AAGG____GG______
5._PA_175_[PER]___
AA______CG__AAGG____GG______
6._PA_175_[PER]___
AA______CG__AAGG____GG______
7._PA_175_[PER]___
AA______CG__AAGG____GG______
8._PA_175_[PER]___
AA______CG__AAGG____GG______
9._PA_175_[PER]___
AA______CG__AAGG____GG______
10._PA_175_[PER]___
______GGCGCCAAGG____GGTT____
11._PA_175_[PER]___
AA______CG__AAGG____GG______
12._PA_175_[PER]___
________CG__AA________TT____
13._PA_175_[PER]___
AAAAACGGCGCCAACCCCAAGGAAGGGG
14._PA_175_[PER]___
AAAAACGGCGCCAACCCCAAGGAAGGGG
15._PA_175_[PER]___
AAAAACGGCGCCAACCCCAAGGAAGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGAGGGTTCCCC
1._PA_175_[PER]___
GGTTCCAAGGAACCCCGGAGGGTTCCCC
2._PA_175_[PER]___
GGTTCCAAGGAACCCCGGAGGGTTCCCC
3._PA_175_[PER]___
GGTTCCAAGGAACCCCGGAGGGTTCCCC
4._PA_175_[PER]___
____CC__________________CCCC
5._PA_175_[PER]___
____CC__________________CCCC
6._PA_175_[PER]___
____CC__________________CCCC
7._PA_175_[PER]___
____CC__________________CCCC
8._PA_175_[PER]___
____CC__________________CCCC
9._PA_175_[PER]___
____CC__________________CCCC
10._PA_175_[PER]___
GGTT____GG____________CTCC__
11._PA_175_[PER]___
____CC__________________CCCC
12._PA_175_[PER]___
________GG__________________
13._PA_175_[PER]___
CC__GG__GGAAGG__GGAGCCAGGGGG
14._PA_175_[PER]___
CC__GG__GGAAGG__GGAGCCAGGGGG
15._PA_175_[PER]___
CC__GG__GGAAGG__GGAGCCAGGGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCCCTCTAAGGGGCCGGGTGGAGCT
1._PA_175_[PER]___
TTAGCCCTCTAAGGGGCCGGGTGGAGCT
2._PA_175_[PER]___
TTAGCCCTCTAAGGGGCCGGGTGGAGCT
3._PA_175_[PER]___
TTAGCCCTCTAAGGGGCCGGGTGGAGCT
4._PA_175_[PER]___
____CC__CTAAGG__CCGGGTGG____
5._PA_175_[PER]___
____CC__CTAAGG__CCGGGTGG____
6._PA_175_[PER]___
____CC__CTAAGG__CCGGGTGG____
7._PA_175_[PER]___
____CC__CTAAGG__CCGGGTGG____
8._PA_175_[PER]___
____CC__CTAAGG__CCGGGTGG____
9._PA_175_[PER]___
____CC__CTAAGG__CCGGGTGG____
10._PA_175_[PER]___
TT__CCCTCTAA__GGCCGGGTGGAG__
11._PA_175_[PER]___
____CC__CTAAGG__CCGGGT______
12._PA_175_[PER]___
__AG____________CCGG__GGAG__
13._PA_175_[PER]___
AAAGGGAGAGAAGGGGCCGGACCCAG__
14._PA_175_[PER]___
AAAGGGAGAGAAGGGGCCGGACCCAG__
15._PA_175_[PER]___
AAAGGGAGAGAAGGGGCCGGACCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGCTCCAGACACAGACCGCCATAATT
1._PA_175_[PER]___
CCGGCTCCAGACACAGACCGCCATAATT
2._PA_175_[PER]___
CCGGCTCCAGACACAGACCGCCATAATT
3._PA_175_[PER]___
CCGGCTCCAGACACAGACCGCCATAATT
4._PA_175_[PER]___
__GGCT__________ACCG______TT
5._PA_175_[PER]___
__GGCT__________ACCG______TT
6._PA_175_[PER]___
__GGCT__________ACCG______TT
7._PA_175_[PER]___
__GGCT__________ACCG______TT
8._PA_175_[PER]___
__AACT__________ACCG______TT
9._PA_175_[PER]___
__AACT__________ACCG______TT
10._PA_175_[PER]___
________________ACCG____AATT
11._PA_175_[PER]___
__AACT__________ACCG______TT
12._PA_175_[PER]___
__AA____________AACG____AA__
13._PA_175_[PER]___
____AGCCAGACAC__ACCGGGATAAAA
14._PA_175_[PER]___
____AGCCAGACAC__ACCGGGATAAAA
15._PA_175_[PER]___
____AGCCAGACAC__ACCGGGATAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCTTAACTCCTTTTAAGGX_XX_XX_XX_X
1._PA_175_[PER]___
TTCCTTAACTCCTTTTAAGGX_XX_XX_XX_X
2._PA_175_[PER]___
TTCCTTAACTCCTTTTAAGGX_XX_XX_XX_X
3._PA_175_[PER]___
TTCCTTAACTCCTTTTAAGGX_XX_XX_XX_X
4._PA_175_[PER]___
TTCC__AA__CCTTTT____X_XX_XX_XX_X
5._PA_175_[PER]___
TTCC__AA__CCTTTT____X_XX_XX_XX_X
6._PA_175_[PER]___
TTCC__AA__CCTTTT____X_XX_XX_XX_X
7._PA_175_[PER]___
TTCC__AA__CCTTTT____X_XX_XX_XX_X
8._PA_175_[PER]___
TTCC__AA__CCTTTT____X_XX_XX_XX_X
9._PA_175_[PER]___
TTCC__AA__CCTTTT____X_XX_XX_XX_X
10._PA_175_[PER]___
______AACCCCTT______X_XX_XX_XX_X
11._PA_175_[PER]___
TTCC__AA__CCTTTT____X_XX_XX_XX_X
12._PA_175_[PER]___
__CC____CT__TT______X_XX_XX_XX_X
13._PA_175_[PER]___
AA__AA____GGAAAATTGGX_XX_XX_XX_X
14._PA_175_[PER]___
AA__AA____GGAAAATTGGX_XX_XX_XX_X
15._PA_175_[PER]___
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_175_[PER] NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._PA_175_[PER] NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._PA_175_[PER] NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._PA_175_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016

5._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

6._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

7._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

8._PA_175_[PER] RUQ_37

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_175_[PER]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

10._PA_175_[PER] RUQ_37

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_175_[PER]

95.1 %
41 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

12._PA_175_[PER] RUQ_37

85.7 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

13._PA_175_[PER] -

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 27, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._PA_175_[PER] RUQ_37

50 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

15._PA_175_[PER] MITC-000016

50 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240