SNP Profiles of PA 175 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTACGGGGCCCCCCCCGGTTCCTT
1._PA_175_[PER]___
AAACCTACGGGGCCCCCCCCGGTTCCTT
2._PA_175_[PER]___
AAACCTACGGGGCCCCCCCCGGTTCCTT
3._PA_175_[PER]___
AAACCTACGGGGCCCCCCCCGGTTCCTT
4._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
5._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
6._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
7._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
8._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
9._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
10._PA_175_[PER]___
____CTAC____CT__CC____TTCC__
11._PA_175_[PER]___
AAACCTAC________CCCCGG__CC__
12._PA_175_[PER]___
______AC____CT______________
13._PA_175_[PER]___
AAAC__ACGGGG__GGGG__GGAAGGAA
14._PA_175_[PER]___
AAAC__ACGGGG__GGGG__GGAAGGAA
15._PA_175_[PER]___
AAAC__ACGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAGCGCCCGCTAATTGGATAACCGG
1._PA_175_[PER]___
AACCAGCGCCCGCTAATTGGATAACCGG
2._PA_175_[PER]___
AACCAGCGCCCGCTAATTGGATAACCGG
3._PA_175_[PER]___
AACCAGCGCCCGCTAATTGGATAACCGG
4._PA_175_[PER]___
____AG____CG________ATAA__GG
5._PA_175_[PER]___
____AG____CG________ATAA__GG
6._PA_175_[PER]___
____AG____CG________ATAA__GG
7._PA_175_[PER]___
____AG____CG________ATAA__GG
8._PA_175_[PER]___
____AG____CG________ATAA__GG
9._PA_175_[PER]___
____AG____CG________ATAA__GG
10._PA_175_[PER]___
________CC________GG__AACCGG
11._PA_175_[PER]___
____AGTTCCCG________ATAA__GG
12._PA_175_[PER]___
____AGTT__________________GG
13._PA_175_[PER]___
TTCCAGCG__CGAGGGAAGGATAAGGCC
14._PA_175_[PER]___
TTCCAGCG__CGAGGGAAGGATAAGGCC
15._PA_175_[PER]___
TTCCAGCG__CGAGGGAAGGATAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGCGCCAAGGTTGGTTGGCCGG
1._PA_175_[PER]___
AATTGTGGCGCCAAGGTTGGTTGGCCGG
2._PA_175_[PER]___
AATTGTGGCGCCAAGGTTGGTTGGCCGG
3._PA_175_[PER]___
AATTGTGGCGCCAAGGTTGGTTGGCCGG
4._PA_175_[PER]___
AA______CG__AAGG__GG________
5._PA_175_[PER]___
AA______CG__AAGG__GG________
6._PA_175_[PER]___
AA______CG__AAGG__GG________
7._PA_175_[PER]___
AA______CG__AAGG__GG________
8._PA_175_[PER]___
AA______CG__AAGG__GG________
9._PA_175_[PER]___
AA______CG__AAGG__GG________
10._PA_175_[PER]___
______GGCGCCAAGG__GGTT____GG
11._PA_175_[PER]___
AA______CG__AAGG__GG________
12._PA_175_[PER]___
________CG__AA______TT______
13._PA_175_[PER]___
AAAAACGGCGCCAACCAAGGAAGGGGCC
14._PA_175_[PER]___
AAAAACGGCGCCAACCAAGGAAGGGGCC
15._PA_175_[PER]___
AAAAACGGCGCCAACCAAGGAAGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTCCAAGGAACCCCGGAGGGTTCCCCTT
1._PA_175_[PER]___
TTCCAAGGAACCCCGGAGGGTTCCCCTT
2._PA_175_[PER]___
TTCCAAGGAACCCCGGAGGGTTCCCCTT
3._PA_175_[PER]___
TTCCAAGGAACCCCGGAGGGTTCCCCTT
4._PA_175_[PER]___
__CC__________________CCCC__
5._PA_175_[PER]___
__CC__________________CCCC__
6._PA_175_[PER]___
__CC__________________CCCC__
7._PA_175_[PER]___
__CC__________________CCCC__
8._PA_175_[PER]___
__CC__________________CCCC__
9._PA_175_[PER]___
__CC__________________CCCC__
10._PA_175_[PER]___
TT____GG____________CTCC__TT
11._PA_175_[PER]___
__CC__________________CCCC__
12._PA_175_[PER]___
______GG____________________
13._PA_175_[PER]___
__GG__GGAAGG__GGAGCCAGGGGGAA
14._PA_175_[PER]___
__GG__GGAAGG__GGAGCCAGGGGGAA
15._PA_175_[PER]___
__GG__GGAAGG__GGAGCCAGGGGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCCCTCTAAGGGGCCGGGTGGAGCTCC
1._PA_175_[PER]___
AGCCCTCTAAGGGGCCGGGTGGAGCTCC
2._PA_175_[PER]___
AGCCCTCTAAGGGGCCGGGTGGAGCTCC
3._PA_175_[PER]___
AGCCCTCTAAGGGGCCGGGTGGAGCTCC
4._PA_175_[PER]___
__CC__CTAAGG__CCGGGTGG______
5._PA_175_[PER]___
__CC__CTAAGG__CCGGGTGG______
6._PA_175_[PER]___
__CC__CTAAGG__CCGGGTGG______
7._PA_175_[PER]___
__CC__CTAAGG__CCGGGTGG______
8._PA_175_[PER]___
__CC__CTAAGG__CCGGGTGG______
9._PA_175_[PER]___
__CC__CTAAGG__CCGGGTGG______
10._PA_175_[PER]___
__CCCTCTAA__GGCCGGGTGGAG____
11._PA_175_[PER]___
__CC__CTAAGG__CCGGGT________
12._PA_175_[PER]___
AG____________CCGG__GGAG____
13._PA_175_[PER]___
AGGGAGAGAAGGGGCCGGACCCAG____
14._PA_175_[PER]___
AGGGAGAGAAGGGGCCGGACCCAG____
15._PA_175_[PER]___
AGGGAGAGAAGGGGCCGGACCCAG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGCTCCAGACACAGACCGCCATAATTTT
1._PA_175_[PER]___
GGCTCCAGACACAGACCGCCATAATTTT
2._PA_175_[PER]___
GGCTCCAGACACAGACCGCCATAATTTT
3._PA_175_[PER]___
GGCTCCAGACACAGACCGCCATAATTTT
4._PA_175_[PER]___
GGCT__________ACCG______TTTT
5._PA_175_[PER]___
GGCT__________ACCG______TTTT
6._PA_175_[PER]___
GGCT__________ACCG______TTTT
7._PA_175_[PER]___
GGCT__________ACCG______TTTT
8._PA_175_[PER]___
AACT__________ACCG______TTTT
9._PA_175_[PER]___
AACT__________ACCG______TTTT
10._PA_175_[PER]___
______________ACCG____AATT__
11._PA_175_[PER]___
AACT__________ACCG______TTTT
12._PA_175_[PER]___
AA____________AACG____AA____
13._PA_175_[PER]___
__AGCCAGACAC__ACCGGGATAAAAAA
14._PA_175_[PER]___
__AGCCAGACAC__ACCGGGATAAAAAA
15._PA_175_[PER]___
__AGCCAGACAC__ACCGGGATAAAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._PA_175_[PER]___
CCTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._PA_175_[PER]___
CCTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._PA_175_[PER]___
CCTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._PA_175_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
5._PA_175_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._PA_175_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._PA_175_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._PA_175_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._PA_175_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._PA_175_[PER]___
____AACCCCTT______X_XX_XX_XX_XX_X
11._PA_175_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
12._PA_175_[PER]___
CC____CT__TT______X_XX_XX_XX_XX_X
13._PA_175_[PER]___
__AA____GGAAAATTGGX_XX_XX_XX_XX_X
14._PA_175_[PER]___
__AA____GGAAAATTGGX_XX_XX_XX_XX_X
15._PA_175_[PER]___
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: PA_175_[PER] NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._PA_175_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._PA_175_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._PA_175_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016

5._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

6._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

7._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

8._PA_175_[PER] RUQ_37

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_175_[PER]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

10._PA_175_[PER] RUQ_37

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_175_[PER]

95.1 %
41 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

12._PA_175_[PER] RUQ_37

85.7 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

13._PA_175_[PER] -

50.6 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 27, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._PA_175_[PER] RUQ_37

50.6 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

15._PA_175_[PER] MITC-000016

50.6 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240