SNP Profiles of PA 72 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTCCGGGGCCCCCCCCGGTTCCTT
1._PA_56_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
2._PA_56_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
3._PA_56_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
4._PA_56_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
5._PA_56_[PER]___
AAACCTCC________CCCCGG__CC__
6._PA_56_[PER]___
AAACCTCC________CCCCGG__CC__
7._PA_56_[PER]___
AAACCTCC________CCCCGG__CC__
8._PA_56_[PER]___
AAACCTCC________CCCCGG__CC__
9._PA_56_[PER]___
AAACCTCC________CCCCGG__CC__
10._PA_56_[PER]___
AAACCTCC________CCCCGG__CC__
11._PA_56_[PER]___
AAACCTCC________CCCCGG__CC__
12._PA_56_[PER]___
____CTCC____CT__CC____TTCC__
13._PA_56_[PER]___
______CC____CT______________
14._PA_56_[PER]___
AAAC__CCGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCGGCGCCGGCCAATTGGAAAACCGG
1._PA_56_[PER]___
AACCGGCGCCGGCCAATTGGAAAACCGG
2._PA_56_[PER]___
AACCGGCGCCGGCCAATTGGAAAACCGG
3._PA_56_[PER]___
AACCGGCGCCGGCCAATTGGAAAACCGG
4._PA_56_[PER]___
AACCGGCGCCGGCCAATTGGAA__CCGG
5._PA_56_[PER]___
____GG____GG________AAAA__GG
6._PA_56_[PER]___
____GG____GG________AAAA__GG
7._PA_56_[PER]___
____GG____GG________AAAA__GG
8._PA_56_[PER]___
____GG____GG________AAAA__GG
9._PA_56_[PER]___
____GG____GG________AA____GG
10._PA_56_[PER]___
____GG____GG________AAAA__GG
11._PA_56_[PER]___
____GG____GG________AAAA__GG
12._PA_56_[PER]___
________CC________GG__AACCGG
13._PA_56_[PER]___
____GGTT__________________GG
14._PA_56_[PER]___
TTCCGGCG__GGGGGGAAGGAAAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGCGCCAGGGGGTTGGTTAGCC
1._PA_56_[PER]___
AATTGTGGCGCCAGGGGGTTGGTTAGCC
2._PA_56_[PER]___
AATTGTGGCGCCAGGGGGTTGGTTAGCC
3._PA_56_[PER]___
AATTGTGGCGCCAGGGGGTTGGTTAGCC
4._PA_56_[PER]___
AATTGTGGCGCCAGGGGGTTGGTTAGCC
5._PA_56_[PER]___
AA______CG__AGGG____GG______
6._PA_56_[PER]___
AA______CG__AGGG____GG______
7._PA_56_[PER]___
AA______CG__AGGG____GG______
8._PA_56_[PER]___
AA______CG__AGGG____GG______
9._PA_56_[PER]___
AA______CG__AGGG____GG______
10._PA_56_[PER]___
AA______CG__AGGG____GG______
11._PA_56_[PER]___
AA______CG__AGGG____GG______
12._PA_56_[PER]___
______GGCGCCAGGG____GGTT____
13._PA_56_[PER]___
________CG__AG______________
14._PA_56_[PER]___
AAAAACGGCGCCAGCCCCAAGGAAAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGAGGGTTCCCC
1._PA_56_[PER]___
GGTTCCAAGGAACCCCGGAGGGTTCCCC
2._PA_56_[PER]___
GGTTCCAAGGAACCCCGGAGGGTTCCCC
3._PA_56_[PER]___
GGTTCCAAGGAACCCCGGAGGGTTCCCC
4._PA_56_[PER]___
GGTTCCAAGGAACCCCGGAGGGTTCCCC
5._PA_56_[PER]___
____CC__________________CCCC
6._PA_56_[PER]___
____CC__________________CCCC
7._PA_56_[PER]___
____CC__________________CCCC
8._PA_56_[PER]___
____CC__________________CCCC
9._PA_56_[PER]___
____CC__________________CCCC
10._PA_56_[PER]___
____CC__________________CCCC
11._PA_56_[PER]___
____CC__________________CCCC
12._PA_56_[PER]___
GGTT____GG____________CTCC__
13._PA_56_[PER]___
________GG__________________
14._PA_56_[PER]___
CC__GG__GGAAGG__GGAGCCAGGGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
1._PA_56_[PER]___
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
2._PA_56_[PER]___
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
3._PA_56_[PER]___
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
4._PA_56_[PER]___
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
5._PA_56_[PER]___
____CC__CTAAGG__CCAGGTGG____
6._PA_56_[PER]___
____CC__CTAAGG__CCAGGTGG____
7._PA_56_[PER]___
____CC__CTAAGG__CCAGGTGG____
8._PA_56_[PER]___
____CC__CTAAGG__CCAGGTGG____
9._PA_56_[PER]___
____CC__CTAAGG__CCAGGTGG____
10._PA_56_[PER]___
____CC__CTACGG__CCAGGTGG____
11._PA_56_[PER]___
____CC__CTACGG__CCAGGTGG____
12._PA_56_[PER]___
TT__CCCCCTAC__GGCCAGGTGGAG__
13._PA_56_[PER]___
__GG____________CCAG__GGAG__
14._PA_56_[PER]___
AAGGGGGGAGACGGGGCCAGACCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGCTACAGACAAAGACCGCCATAATT
1._PA_56_[PER]___
CCGGCTACAGACAAAGACCGCCATAATT
2._PA_56_[PER]___
CCGGCTACAGACAAAGACCGCCATAATT
3._PA_56_[PER]___
CCGGCTACAGACAAAGACCGCCATAATT
4._PA_56_[PER]___
CCGGCTACAGACAAAGACCGCCATAATT
5._PA_56_[PER]___
__GGCT__________ACCG______TT
6._PA_56_[PER]___
__GGCT__________ACCG______TT
7._PA_56_[PER]___
__GGCT__________ACCG______TT
8._PA_56_[PER]___
__GGCT__________ACCG______TT
9._PA_56_[PER]___
__GGCT__________ACCG______TT
10._PA_56_[PER]___
__AACT__________ACCG______TT
11._PA_56_[PER]___
__AACT__________ACCG______TT
12._PA_56_[PER]___
________________ACCG____AATT
13._PA_56_[PER]___
__AA____________AACG____AA__
14._PA_56_[PER]___
____AGACAGACAA__ACCGGGATAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
1._PA_56_[PER]___
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
2._PA_56_[PER]___
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
3._PA_56_[PER]___
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
4._PA_56_[PER]___
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
5._PA_56_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
6._PA_56_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
7._PA_56_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
8._PA_56_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
9._PA_56_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
10._PA_56_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
11._PA_56_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
12._PA_56_[PER]___
______AACCCCTT______X_XX_XX_XX_X
13._PA_56_[PER]___
__CC________TT______X_XX_XX_XX_X
14._PA_56_[PER]___
AG__AG____GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_56_[PER] NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

1._PA_56_[PER] NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

2._PA_56_[PER] NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_56_[PER] NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._PA_56_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._PA_56_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

6._PA_56_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

7._PA_56_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

8._PA_56_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

9._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016

10._PA_56_[PER] RUQ_32

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._PA_56_[PER]

96.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

12._PA_56_[PER] RUQ_32

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_56_[PER] RUQ_32

84.2 %
19 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

14._PA_56_[PER] -

49.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 76, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240