SNP Profiles of PA 56 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGGGCCCCCCCCGGTTCCTT
1._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
2._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
3._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
4._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
5._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
6._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
7._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
8._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
9._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
10._RUQ_32
AAACCTCC________CCCCGG__CC__
11._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
12._RUQ_32
____CTCC____CT__CC____TTCC__
13._RUQ_32
______CC____CT______________
14._-
AAAC__CCGGGG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCGGCGCCGGCCAATTGGAAAACCGG
1._NA
AACCGGCGCCGGCCAATTGGAAAACCGG
2._NA
AACCGGCGCCGGCCAATTGGAAAACCGG
3._NA
AACCGGCGCCGGCCAATTGGAAAACCGG
4._NA
AACCGGCGCCGGCCAATTGGAA__CCGG
5._PA_56_[PER]
____GG____GG________AAAA__GG
6._PA_56_[PER]
____GG____GG________AAAA__GG
7._PA_56_[PER]
____GG____GG________AAAA__GG
8._PA_56_[PER]
____GG____GG________AAAA__GG
9._PA_56_[PER]
____GG____GG________AA____GG
10._RUQ_32
____GG____GG________AAAA__GG
11._PA_56_[PER]
____GG____GG________AAAA__GG
12._RUQ_32
________CC________GG__AACCGG
13._RUQ_32
____GGTT__________________GG
14._-
TTCCGGCG__GGGGGGAAGGAAAAGGCC
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGGGGTTGGTTAGCC
1._NA
AATTGTGGCGCCAGGGGGTTGGTTAGCC
2._NA
AATTGTGGCGCCAGGGGGTTGGTTAGCC
3._NA
AATTGTGGCGCCAGGGGGTTGGTTAGCC
4._NA
AATTGTGGCGCCAGGGGGTTGGTTAGCC
5._PA_56_[PER]
AA______CG__AGGG____GG______
6._PA_56_[PER]
AA______CG__AGGG____GG______
7._PA_56_[PER]
AA______CG__AGGG____GG______
8._PA_56_[PER]
AA______CG__AGGG____GG______
9._PA_56_[PER]
AA______CG__AGGG____GG______
10._RUQ_32
AA______CG__AGGG____GG______
11._PA_56_[PER]
AA______CG__AGGG____GG______
12._RUQ_32
______GGCGCCAGGG____GGTT____
13._RUQ_32
________CG__AG______________
14._-
AAAAACGGCGCCAGCCCCAAGGAAAGGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGAGGGTTCCCC
1._NA
GGTTCCAAGGAACCCCGGAGGGTTCCCC
2._NA
GGTTCCAAGGAACCCCGGAGGGTTCCCC
3._NA
GGTTCCAAGGAACCCCGGAGGGTTCCCC
4._NA
GGTTCCAAGGAACCCCGGAGGGTTCCCC
5._PA_56_[PER]
____CC__________________CCCC
6._PA_56_[PER]
____CC__________________CCCC
7._PA_56_[PER]
____CC__________________CCCC
8._PA_56_[PER]
____CC__________________CCCC
9._PA_56_[PER]
____CC__________________CCCC
10._RUQ_32
____CC__________________CCCC
11._PA_56_[PER]
____CC__________________CCCC
12._RUQ_32
GGTT____GG____________CTCC__
13._RUQ_32
________GG__________________
14._-
CC__GG__GGAAGG__GGAGCCAGGGGG
 5758596061626364656667686970
_Input profile
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
1._NA
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
2._NA
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
3._NA
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
4._NA
TTGGCCCCCTAAGGGGCCAGGTGGAGCT
5._PA_56_[PER]
____CC__CTAAGG__CCAGGTGG____
6._PA_56_[PER]
____CC__CTAAGG__CCAGGTGG____
7._PA_56_[PER]
____CC__CTAAGG__CCAGGTGG____
8._PA_56_[PER]
____CC__CTAAGG__CCAGGTGG____
9._PA_56_[PER]
____CC__CTAAGG__CCAGGTGG____
10._RUQ_32
____CC__CTACGG__CCAGGTGG____
11._PA_56_[PER]
____CC__CTACGG__CCAGGTGG____
12._RUQ_32
TT__CCCCCTAC__GGCCAGGTGGAG__
13._RUQ_32
__GG____________CCAG__GGAG__
14._-
AAGGGGGGAGACGGGGCCAGACCCAG__
 7172737475767778798081828384
_Input profile
CCGGCTACAGACAAAGACCGCCATAATT
1._NA
CCGGCTACAGACAAAGACCGCCATAATT
2._NA
CCGGCTACAGACAAAGACCGCCATAATT
3._NA
CCGGCTACAGACAAAGACCGCCATAATT
4._NA
CCGGCTACAGACAAAGACCGCCATAATT
5._PA_56_[PER]
__GGCT__________ACCG______TT
6._PA_56_[PER]
__GGCT__________ACCG______TT
7._PA_56_[PER]
__GGCT__________ACCG______TT
8._PA_56_[PER]
__GGCT__________ACCG______TT
9._PA_56_[PER]
__GGCT__________ACCG______TT
10._RUQ_32
__AACT__________ACCG______TT
11._PA_56_[PER]
__AACT__________ACCG______TT
12._RUQ_32
________________ACCG____AATT
13._RUQ_32
__AA____________AACG____AA__
14._-
____AGACAGACAA__ACCGGGATAAAA
 85868788899091929394    
_Input profile
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
1._NA
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
2._NA
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
3._NA
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
4._NA
CTCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
5._PA_56_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
6._PA_56_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
7._PA_56_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
8._PA_56_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
9._PA_56_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
10._RUQ_32
CTCC__AA__CCTTTT____X_XX_XX_XX_X
11._PA_56_[PER]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
12._RUQ_32
______AACCCCTT______X_XX_XX_XX_X
13._RUQ_32
__CC________TT______X_XX_XX_XX_X
14._-
AG__AG____GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_56_[PER] NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

1._PA_56_[PER] NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

2._PA_56_[PER] NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_56_[PER] NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._PA_56_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._PA_56_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

6._PA_56_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

7._PA_56_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

8._PA_56_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

9._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._PA_56_[PER] RUQ_32

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._PA_56_[PER]

96.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

12._PA_56_[PER] RUQ_32

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_56_[PER] RUQ_32

84.2 %
19 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._PA_56_[PER] -

49.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 76, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240