SNP Profiles of PA 56 [PER]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AAACCTCCGGGGCCCCCCCCGGTTCCTT
1._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
2._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
3._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
4._NA
AAACCTCCGGGGCCCCCCCCGGTTCCTT
5._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
6._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
7._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
8._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
9._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
10._RUQ_32
AAACCTCC________CCCCGG__CC__
11._PA_56_[PER]
AAACCTCC________CCCCGG__CC__
12._RUQ_32
____CTCC____CT__CC____TTCC__
13._RUQ_32
______CC____CT______________
14._-
AAAC__CCGGGG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCGGCGCCGGCCAATTGGAACCGGAA
1._NA
AACCGGCGCCGGCCAATTGGAACCGGAA
2._NA
AACCGGCGCCGGCCAATTGGAACCGGAA
3._NA
AACCGGCGCCGGCCAATTGGAACCGGAA
4._NA
AACCGGCGCCGGCCAATTGGAACCGGAA
5._PA_56_[PER]
____GG____GG________AA__GGAA
6._PA_56_[PER]
____GG____GG________AA__GGAA
7._PA_56_[PER]
____GG____GG________AA__GGAA
8._PA_56_[PER]
____GG____GG________AA__GGAA
9._PA_56_[PER]
____GG____GG________AA__GGAA
10._RUQ_32
____GG____GG________AA__GGAA
11._PA_56_[PER]
____GG____GG________AA__GGAA
12._RUQ_32
________CC________GG__CCGG__
13._RUQ_32
____GGTT________________GG__
14._-
TTCCGGCG__GGGGGGAAGGAAGGCCAA
 2930313233343536373839404142
_Input profile
TTGTGGCGCCAGGGGGTTGGTTAGCCGG
1._NA
TTGTGGCGCCAGGGGGTTGGTTAGCCGG
2._NA
TTGTGGCGCCAGGGGGTTGGTTAGCCGG
3._NA
TTGTGGCGCCAGGGGGTTGGTTAGCCGG
4._NA
TTGTGGCGCCAGGGGGTTGGTTAGCCGG
5._PA_56_[PER]
______CG__AGGG____GG________
6._PA_56_[PER]
______CG__AGGG____GG________
7._PA_56_[PER]
______CG__AGGG____GG________
8._PA_56_[PER]
______CG__AGGG____GG________
9._PA_56_[PER]
______CG__AGGG____GG________
10._RUQ_32
______CG__AGGG____GG________
11._PA_56_[PER]
______CG__AGGG____GG________
12._RUQ_32
____GGCGCCAGGG____GGTT____GG
13._RUQ_32
______CG__AG________________
14._-
AAACGGCGCCAGCCCCAAGGAAAGGGCC
 4344454647484950515253545556
_Input profile
TTCCAAGGAACCCCGGAGGGTTCCCCTT
1._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
2._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
3._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
4._NA
TTCCAAGGAACCCCGGAGGGTTCCCCTT
5._PA_56_[PER]
__CC__________________CCCC__
6._PA_56_[PER]
__CC__________________CCCC__
7._PA_56_[PER]
__CC__________________CCCC__
8._PA_56_[PER]
__CC__________________CCCC__
9._PA_56_[PER]
__CC__________________CCCC__
10._RUQ_32
__CC__________________CCCC__
11._PA_56_[PER]
__CC__________________CCCC__
12._RUQ_32
TT____GG____________CTCC__TT
13._RUQ_32
______GG____________________
14._-
__GG__GGAAGG__GGAGCCAGGGGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
1._NA
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
2._NA
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
3._NA
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
4._NA
GGCCCCCTAAGGGGCCAGGTGGAGCTCC
5._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
6._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
7._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
8._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
9._PA_56_[PER]
__CC__CTAAGG__CCAGGTGG______
10._RUQ_32
__CC__CTACGG__CCAGGTGG______
11._PA_56_[PER]
__CC__CTACGG__CCAGGTGG______
12._RUQ_32
__CCCCCTAC__GGCCAGGTGGAG____
13._RUQ_32
GG____________CCAG__GGAG____
14._-
GGGGGGAGACGGGGCCAGACCCAG____
 7172737475767778798081828384
_Input profile
GGCTACAGACAAAGACCGCCATAATTCT
1._NA
GGCTACAGACAAAGACCGCCATAATTCT
2._NA
GGCTACAGACAAAGACCGCCATAATTCT
3._NA
GGCTACAGACAAAGACCGCCATAATTCT
4._NA
GGCTACAGACAAAGACCGCCATAATTCT
5._PA_56_[PER]
GGCT__________ACCG______TTCT
6._PA_56_[PER]
GGCT__________ACCG______TTCT
7._PA_56_[PER]
GGCT__________ACCG______TTCT
8._PA_56_[PER]
GGCT__________ACCG______TTCT
9._PA_56_[PER]
GGCT__________ACCG______TTCT
10._RUQ_32
AACT__________ACCG______TTCT
11._PA_56_[PER]
AACT__________ACCG______TTCT
12._RUQ_32
______________ACCG____AATT__
13._RUQ_32
AA____________AACG____AA____
14._-
__AGACAGACAA__ACCGGGATAAAAAG
 858687888990919293     
_Input profile
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._NA
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._NA
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._NA
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._NA
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
5._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._RUQ_32
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._PA_56_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
12._RUQ_32
____AACCCCTT______X_XX_XX_XX_XX_X
13._RUQ_32
CC________TT______X_XX_XX_XX_XX_X
14._-
__AG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: PA_56_[PER] NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._PA_56_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

2._PA_56_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

3._PA_56_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._PA_56_[PER] NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

6._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

7._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

8._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

9._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._PA_56_[PER] RUQ_32

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._PA_56_[PER]

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

12._PA_56_[PER] RUQ_32

95.1 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_56_[PER] RUQ_32

84.2 %
19 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._PA_56_[PER] -

48.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 76, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240