SNP Profiles of CL 911   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTCCAAAACTCTCCCTAGCTCTCT
1._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
2._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
3._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
4._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
5._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
6._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
7._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
8._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
9._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
10._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
11._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
12._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
13._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
14._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
15._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
16._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
17._EET_58_[ECU]___
AAAACTCCAAAGCTCTCCCTAGCTCTCT
18._EET_58_[ECU]___
ATACCTCC________CCCTAG__CT__
19._EET_58_[ECU]___
ATACCTCC________CCCTGG__CT__
20._EET_58_[ECU]___
______CC____TT______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACAAAGCGCGGGCCAGCTGGATATCC
1._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
2._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
3._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
4._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
5._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
6._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
7._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
8._EET_58_[ECU]___
______AG____GG________ATAT__
9._EET_58_[ECU]___
______AG____GG________ATAT__
10._EET_58_[ECU]___
______AG____GG________ATAT__
11._EET_58_[ECU]___
______AG____GG________ATAT__
12._EET_58_[ECU]___
______AG____GG________ATAT__
13._EET_58_[ECU]___
______AG____GG________ATAT__
14._EET_58_[ECU]___
______AG____GG________ATAT__
15._EET_58_[ECU]___
______AG____GG________ATAT__
16._EET_58_[ECU]___
______AG____GG________ATAT__
17._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
18._EET_58_[ECU]___
______AG____GG________ATAT__
19._EET_58_[ECU]___
______AG____GG________ATAT__
20._EET_58_[ECU]___
______AGCT__________________
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATTTTTGGCGACAGGTGGGTAGCTAG
1._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
2._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
3._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
4._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
5._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
6._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
7._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
8._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
9._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
10._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
11._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
12._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
13._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
14._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
15._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
16._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
17._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
18._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
19._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
20._EET_58_[ECU]___
GG________CG__AG________CT__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CGGTATCTAAGGAGCTACGGAGGTCTCC
1._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTCTCC
2._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTCTCC
3._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTCTCC
4._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTCTCC
5._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTCTCC
6._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTCTCC
7._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTCTCC
8._EET_58_[ECU]___
______CT________________CTCC
9._EET_58_[ECU]___
______CT________________CTCC
10._EET_58_[ECU]___
______CT________________CTCC
11._EET_58_[ECU]___
______CT________________CTCC
12._EET_58_[ECU]___
______CT________________CTCC
13._EET_58_[ECU]___
______CT________________CTCC
14._EET_58_[ECU]___
______CT________________CTCC
15._EET_58_[ECU]___
______CT________________CTCC
16._EET_58_[ECU]___
______CT________________CTCC
17._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTCTCC
18._EET_58_[ECU]___
______CT________________CTCT
19._EET_58_[ECU]___
______CT________________CTCT
20._EET_58_[ECU]___
__________GG________________
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAGCCCTCTCCCGGGCCAGGGGGAGCT
1._EET_58_[ECU]___
GTAGCCCTCTCCCGGGCCAGGGGGAGCT
2._EET_58_[ECU]___
GTAGCCCTCTCCCGGGCCAGGGGGAGCT
3._EET_58_[ECU]___
GTAGCCCTCTCCCGGGCCAGGGGGAGCT
4._EET_58_[ECU]___
GTAGCCCTCTCCCGGGCCAGGGGGAGCT
5._EET_58_[ECU]___
GTAGCCCTCTCCCGGGCCAGGGGGAGCT
6._EET_58_[ECU]___
GTAGCCCTCTCCCGGGCCAGGGGGAGCT
7._EET_58_[ECU]___
GTAGCCCTCTCCCGGGCCAGGGGGAGCT
8._EET_58_[ECU]___
____CC__CTCCCG__CCAGGGGG____
9._EET_58_[ECU]___
____CC__CTCCCG__CCAGGGGG____
10._EET_58_[ECU]___
____CC__CTCCCG__CCAGGGGG____
11._EET_58_[ECU]___
____CC__CTCCCG__CCAGGGGG____
12._EET_58_[ECU]___
____CC__CTCCCG__CCAGGGGG____
13._EET_58_[ECU]___
____CC__CTCCCG__CCAGGGGG____
14._EET_58_[ECU]___
____CC__CTCCCG__CCAGGGGG____
15._EET_58_[ECU]___
____CC__CTCCCG__CCAGGGGG____
16._EET_58_[ECU]___
____CC__CTCCCG__CCAGGGGG____
17._EET_58_[ECU]___
GTAGCCCTCTCCCGGGCCAGGGGGAGCT
18._EET_58_[ECU]___
____CG__CTCCCG__CCAAGTGG____
19._EET_58_[ECU]___
____CG__CTCCCG__CCAAGTGG____
20._EET_58_[ECU]___
__AG____________CCAA__GGAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAGCTCCGGACACAAACCGCCAAACTT
1._EET_58_[ECU]___
CCAGCTCCGGACACAAACCGCCAAACTT
2._EET_58_[ECU]___
CCAGCTCCGGACACAAACCGCCAAACTT
3._EET_58_[ECU]___
CCAGCTCCGGACACAAACCGCCAAACTT
4._EET_58_[ECU]___
CCAGCTCCGGACACAAACCGCCAAACTT
5._EET_58_[ECU]___
CCAGCTCCGGACACAAACCGCCAAACTT
6._EET_58_[ECU]___
CCAGCTCCGGACACAAACCGCCAAACTT
7._EET_58_[ECU]___
CCAGCTCCGGACACAAACCGCCAAACTT
8._EET_58_[ECU]___
__AGCT__________ACCG______TT
9._EET_58_[ECU]___
__AGCT__________ACCG______TT
10._EET_58_[ECU]___
__AGCT__________ACCG______TT
11._EET_58_[ECU]___
__AGCT__________ACCG______TT
12._EET_58_[ECU]___
__AGCT__________ACCG______TT
13._EET_58_[ECU]___
__AGCT__________ACCG______TT
14._EET_58_[ECU]___
__AGCT__________ACCG______TT
15._EET_58_[ECU]___
__AGCT__________ACCG______TT
16._EET_58_[ECU]___
__AGCT__________ACCG______TT
17._EET_58_[ECU]___
CCAGCTCCGGACACAAACCGCCAAACTT
18._EET_58_[ECU]___
__AGCT__________ACCG______TT
19._EET_58_[ECU]___
__AGCT__________ACCG______CT
20._EET_58_[ECU]___
__AG____________ACCG____AC__
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCTTTGGCCCCGTCTAAGGX_XX_XX_XX_X
1._EET_58_[ECU]___
TTCTTTGGCCCCGTCTAAGGX_XX_XX_XX_X
2._EET_58_[ECU]___
TTCTTTGGCCCCGTCTAAGGX_XX_XX_XX_X
3._EET_58_[ECU]___
TTCTTTGGCCCCGTCTAAGGX_XX_XX_XX_X
4._EET_58_[ECU]___
TTCTTTGGCCCCGTCTAAGGX_XX_XX_XX_X
5._EET_58_[ECU]___
TTCTTTGGCCCCGTCTAAGGX_XX_XX_XX_X
6._EET_58_[ECU]___
TTCTTTGGCCCCGTCTAAGGX_XX_XX_XX_X
7._EET_58_[ECU]___
TTCTTTGGCCCCGTCTAAGGX_XX_XX_XX_X
8._EET_58_[ECU]___
TTCT__GG__CCGTCT____X_XX_XX_XX_X
9._EET_58_[ECU]___
TTCT__GG__CCGTCT____X_XX_XX_XX_X
10._EET_58_[ECU]___
TTCT__GG__CCGTCT____X_XX_XX_XX_X
11._EET_58_[ECU]___
TTCT__GG__CCGTCT____X_XX_XX_XX_X
12._EET_58_[ECU]___
TTCT__GG__CCGTCT____X_XX_XX_XX_X
13._EET_58_[ECU]___
TTCT__GG__CCGTCT____X_XX_XX_XX_X
14._EET_58_[ECU]___
TTCT__GG__CCGTCT____X_XX_XX_XX_X
15._EET_58_[ECU]___
TTCT__GG__CCGTCT____X_XX_XX_XX_X
16._EET_58_[ECU]___
TTCT__GG__CCGTCT____X_XX_XX_XX_X
17._EET_58_[ECU]___
TTCTTTGGCCCCGTCTAAGGX_XX_XX_XX_X
18._EET_58_[ECU]___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
19._EET_58_[ECU]___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
20._EET_58_[ECU]___
__CT____CT__GT______X_XX_XX_XX_X

Input profile: EET_58_[ECU] GC-08-287-8-59

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._EET_58_[ECU] GC-08-287-8-59

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._EET_58_[ECU] GC-08-287-8-59

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._EET_58_[ECU] GC-08-287-8-59

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._EET_58_[ECU] GC-08-287-8-59

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._EET_58_[ECU] GC-08-287-8-59

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._EET_58_[ECU] GC-08-287-8-59

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._EET_58_[ECU] GC-08-287-8-59

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 1
 Dapeng Zhang, 2016

9._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 3
 Dapeng Zhang, 2016

10._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 4
 Dapeng Zhang, 2016

11._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 5
 Dapeng Zhang, 2016

12._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 6
 Dapeng Zhang, 2016

13._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 7
 Dapeng Zhang, 2016

14._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 8
 Dapeng Zhang, 2016

15._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 9
 Dapeng Zhang, 2016

16._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 10
 Dapeng Zhang, 2016

17._EET_58_[ECU] GC-08-287-8-59

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._EET_58_[ECU]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

19._EET_58_[ECU] RUQ_383

88.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._EET_58_[ECU] RUQ_383

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240