SNP Profiles of EET-58   View Data

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 1234567891011121314
_Input profile
AAAACTCCAAAGCTCTCCCTAGCTCTCT
1._EET_58_[ECU]
AAAACTCC________CCCTAG__CT__
2._EET_58_[ECU]
AAAACTCC________CCCTAG__CT__
3._EET_58_[ECU]
AAAACTCC________CCCTAG__CT__
4._EET_58_[ECU]
AAAACTCC________CCCTAG__CT__
5._EET_58_[ECU]
AAAACTCC________CCCTAG__CT__
6._EET_58_[ECU]
AAAACTCC________CCCTAG__CT__
7._EET_58_[ECU]
AAAACTCC________CCCTAG__CT__
8._EET_58_[ECU]
AAAACTCC________CCCTAG__CT__
9._EET_58_[ECU]
AAAACTCC________CCCTAG__CT__
10._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
11._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
12._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
13._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
14._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
15._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
16._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
17._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
18._EET_58_[ECU]
ATACCTCC________CCCTAG__CT__
19._RUQ_383
ATACCTCC________CCCTGG__CT__
20._RUQ_383
______CC____TT______________
 1516171819202122232425262728
_Input profile
ATACAAAGCGCGGGCCAGCTGGATATCC
1._EET_58_[ECU]
______AG____GG________ATAT__
2._EET_58_[ECU]
______AG____GG________ATAT__
3._EET_58_[ECU]
______AG____GG________ATAT__
4._EET_58_[ECU]
______AG____GG________ATAT__
5._EET_58_[ECU]
______AG____GG________ATAT__
6._EET_58_[ECU]
______AG____GG________ATAT__
7._EET_58_[ECU]
______AG____GG________ATAT__
8._EET_58_[ECU]
______AG____GG________ATAT__
9._EET_58_[ECU]
______AG____GG________ATAT__
10._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
11._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
12._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
13._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
14._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
15._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
16._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
17._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
18._EET_58_[ECU]
______AG____GG________ATAT__
19._RUQ_383
______AG____GG________ATAT__
20._RUQ_383
______AGCT__________________
 2930313233343536373839404142
_Input profile
GGATTTTTGGCGACAGGTGGGTAGCTAG
1._EET_58_[ECU]
GGAT______CG__AGGT____AG____
2._EET_58_[ECU]
GGAT______CG__AGGT____AG____
3._EET_58_[ECU]
GGAT______CG__AGGT____AG____
4._EET_58_[ECU]
GGAT______CG__AGGT____AG____
5._EET_58_[ECU]
GGAT______CG__AGGT____AG____
6._EET_58_[ECU]
GGAT______CG__AGGT____AG____
7._EET_58_[ECU]
GGAT______CG__AGGT____AG____
8._EET_58_[ECU]
GGAT______CG__AGGT____AG____
9._EET_58_[ECU]
GGAT______CG__AGGT____AG____
10._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
11._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
12._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
13._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
14._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
15._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
16._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
17._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
18._EET_58_[ECU]
GGAT______CG__AGGT____AG____
19._RUQ_383
GGAT______CG__AGGT____AG____
20._RUQ_383
GG________CG__AG________CT__
 4344454647484950515253545556
_Input profile
CGGTATCTAAGGAGCTACGGAGGTTTCT
1._EET_58_[ECU]
______CT__________________CT
2._EET_58_[ECU]
______CT__________________CT
3._EET_58_[ECU]
______CT__________________CT
4._EET_58_[ECU]
______CT__________________CT
5._EET_58_[ECU]
______CT__________________CT
6._EET_58_[ECU]
______CT__________________CT
7._EET_58_[ECU]
______CT__________________CT
8._EET_58_[ECU]
______CT__________________CT
9._EET_58_[ECU]
______CT__________________CT
10._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
11._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
12._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
13._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
14._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
15._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
16._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
17._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGT__CT
18._EET_58_[ECU]
______CT__________________CT
19._RUQ_383
______CT__________________CT
20._RUQ_383
__________GG________________
 5758596061626364656667686970
_Input profile
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
1._EET_58_[ECU]
CC____CC__CTCCCG__CCAGGGGG__
2._EET_58_[ECU]
CC____CC__CTCCCG__CCAGGGGG__
3._EET_58_[ECU]
CC____CC__CTCCCG__CCAGGGGG__
4._EET_58_[ECU]
CC____CC__CTCCCG__CCAGGGGG__
5._EET_58_[ECU]
CC____CC__CTCCCG__CCAGGGGG__
6._EET_58_[ECU]
CC____CC__CTCCCG__CCAGGGGG__
7._EET_58_[ECU]
CC____CC__CTCCCG__CCAGGGGG__
8._EET_58_[ECU]
CC____CC__CTCCCG__CCAGGGGG__
9._EET_58_[ECU]
CC____CC__CTCCCG__CCAGGGGG__
10._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
11._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
12._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
13._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
14._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
15._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
16._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
17._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
18._EET_58_[ECU]
CT____CG__CTCCCG__CCAAGTGG__
19._RUQ_383
CT____CG__CTCCCG__CCAAGTGG__
20._RUQ_383
____AG____________CCAA__GGAG
 7172737475767778798081828384
_Input profile
CTCCAGCTCCGGACACAAACCGCCAAAC
1._EET_58_[ECU]
____AGCT__________ACCG______
2._EET_58_[ECU]
____AGCT__________ACCG______
3._EET_58_[ECU]
____AGCT__________ACCG______
4._EET_58_[ECU]
____AGCT__________ACCG______
5._EET_58_[ECU]
____AGCT__________ACCG______
6._EET_58_[ECU]
____AGCT__________ACCG______
7._EET_58_[ECU]
____AGCT__________ACCG______
8._EET_58_[ECU]
____AGCT__________ACCG______
9._EET_58_[ECU]
____AGCT__________ACCG______
10._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
11._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
12._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
13._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
14._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
15._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
16._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
17._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
18._EET_58_[ECU]
____AGCT__________ACCG______
19._RUQ_383
____AGCT__________ACCG______
20._RUQ_383
____AG____________ACCG____AC
 8586878889909192939495   
_Input profile
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
1._EET_58_[ECU]
TTTTCT__GG__CCGTCT____X_XX_XX_X
2._EET_58_[ECU]
TTTTCT__GG__CCGTCT____X_XX_XX_X
3._EET_58_[ECU]
TTTTCT__GG__CCGTCT____X_XX_XX_X
4._EET_58_[ECU]
TTTTCT__GG__CCGTCT____X_XX_XX_X
5._EET_58_[ECU]
TTTTCT__GG__CCGTCT____X_XX_XX_X
6._EET_58_[ECU]
TTTTCT__GG__CCGTCT____X_XX_XX_X
7._EET_58_[ECU]
TTTTCT__GG__CCGTCT____X_XX_XX_X
8._EET_58_[ECU]
TTTTCT__GG__CCGTCT____X_XX_XX_X
9._EET_58_[ECU]
TTTTCT__GG__CCGTCT____X_XX_XX_X
10._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
11._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
12._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
13._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
14._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
15._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
16._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
17._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
18._EET_58_[ECU]
TTTTCT__AG__CCGTCT____X_XX_XX_X
19._RUQ_383
CTTTCT__AG__CCGTCT____X_XX_XX_X
20._RUQ_383
____CT____CT__GT______X_XX_XX_X

Input profile: EET_58_[ECU] GC-08-287-8-59

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 3
 Dapeng Zhang, 2016

3._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 4
 Dapeng Zhang, 2016

4._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 5
 Dapeng Zhang, 2016

5._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 6
 Dapeng Zhang, 2016

6._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 7
 Dapeng Zhang, 2016

7._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 8
 Dapeng Zhang, 2016

8._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 9
 Dapeng Zhang, 2016

9._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 10
 Dapeng Zhang, 2016

10._EET_58_[ECU] GC-08-287-8-59

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._EET_58_[ECU] GC-08-287-8-59

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._EET_58_[ECU] GC-08-287-8-59

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._EET_58_[ECU] GC-08-287-8-59

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._EET_58_[ECU] GC-08-287-8-59

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._EET_58_[ECU] GC-08-287-8-59

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._EET_58_[ECU] GC-08-287-8-59

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._EET_58_[ECU] GC-08-287-8-59

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._EET_58_[ECU]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

19._EET_58_[ECU] RUQ_383

88.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._EET_58_[ECU] RUQ_383

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240