SNP Profiles of EET-19   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTCCAAAACTCTCCCTAGCTCTCT
1._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
2._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
3._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
4._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
5._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
6._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
7._EET_58_[ECU]___
AAAACTCCAAAACTCTCCCTAGCTCTCT
8._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
9._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
10._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
11._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
12._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
13._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
14._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
15._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
16._EET_58_[ECU]___
AAAACTCC________CCCTAG__CT__
17._EET_58_[ECU]___
AAAACTCCAAAGCTCTCCCTAGCTCTCT
18._EET_58_[ECU]___
ATACCTCC________CCCTAG__CT__
19._EET_58_[ECU]___
ATACCTCC________CCCTGG__CT__
20._EET_58_[ECU]___
______CC____TT______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACAAAGCGCGGGCCAGCTGGATATCC
1._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
2._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
3._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
4._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
5._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
6._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
7._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
8._EET_58_[ECU]___
______AG____GG________ATAT__
9._EET_58_[ECU]___
______AG____GG________ATAT__
10._EET_58_[ECU]___
______AG____GG________ATAT__
11._EET_58_[ECU]___
______AG____GG________ATAT__
12._EET_58_[ECU]___
______AG____GG________ATAT__
13._EET_58_[ECU]___
______AG____GG________ATAT__
14._EET_58_[ECU]___
______AG____GG________ATAT__
15._EET_58_[ECU]___
______AG____GG________ATAT__
16._EET_58_[ECU]___
______AG____GG________ATAT__
17._EET_58_[ECU]___
ATACAAAGCGCGGGCCAGCTGGATATCC
18._EET_58_[ECU]___
______AG____GG________ATAT__
19._EET_58_[ECU]___
______AG____GG________ATAT__
20._EET_58_[ECU]___
______AGCT__________________
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATTTTTGGCGACAGGTGGGTAGCTAG
1._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
2._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
3._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
4._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
5._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
6._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
7._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
8._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
9._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
10._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
11._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
12._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
13._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
14._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
15._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
16._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
17._EET_58_[ECU]___
GGATTTTTGGCGACAGGTGGGTAGCTAG
18._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
19._EET_58_[ECU]___
GGAT______CG__AGGT____AG____
20._EET_58_[ECU]___
GG________CG__AG________CT__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CGGTATCTAAGGAGCTACGGAGGTTTCT
1._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTTTCT
2._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTTTCT
3._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTTTCT
4._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTTTCT
5._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTTTCT
6._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTTTCT
7._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGT__CT
8._EET_58_[ECU]___
______CT__________________CT
9._EET_58_[ECU]___
______CT__________________CT
10._EET_58_[ECU]___
______CT__________________CT
11._EET_58_[ECU]___
______CT__________________CT
12._EET_58_[ECU]___
______CT__________________CT
13._EET_58_[ECU]___
______CT__________________CT
14._EET_58_[ECU]___
______CT__________________CT
15._EET_58_[ECU]___
______CT__________________CT
16._EET_58_[ECU]___
______CT__________________CT
17._EET_58_[ECU]___
CGGTATCTAAGGAGCTACGGAGGTTTCT
18._EET_58_[ECU]___
______CT__________________CT
19._EET_58_[ECU]___
______CT__________________CT
20._EET_58_[ECU]___
__________GG________________
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
1._EET_58_[ECU]___
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
2._EET_58_[ECU]___
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
3._EET_58_[ECU]___
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
4._EET_58_[ECU]___
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
5._EET_58_[ECU]___
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
6._EET_58_[ECU]___
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
7._EET_58_[ECU]___
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
8._EET_58_[ECU]___
CC____CC__CTCCCG__CCAGGGGG__
9._EET_58_[ECU]___
CC____CC__CTCCCG__CCAGGGGG__
10._EET_58_[ECU]___
CC____CC__CTCCCG__CCAGGGGG__
11._EET_58_[ECU]___
CC____CC__CTCCCG__CCAGGGGG__
12._EET_58_[ECU]___
CC____CC__CTCCCG__CCAGGGGG__
13._EET_58_[ECU]___
CC____CC__CTCCCG__CCAGGGGG__
14._EET_58_[ECU]___
CC____CC__CTCCCG__CCAGGGGG__
15._EET_58_[ECU]___
CC____CC__CTCCCG__CCAGGGGG__
16._EET_58_[ECU]___
CC____CC__CTCCCG__CCAGGGGG__
17._EET_58_[ECU]___
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
18._EET_58_[ECU]___
CT____CG__CTCCCG__CCAAGTGG__
19._EET_58_[ECU]___
CT____CG__CTCCCG__CCAAGTGG__
20._EET_58_[ECU]___
____AG____________CCAA__GGAG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCAGCTCCGGACACAAACCGCCAAAC
1._EET_58_[ECU]___
CTCCAGCTCCGGACACAAACCGCCAAAC
2._EET_58_[ECU]___
CTCCAGCTCCGGACACAAACCGCCAAAC
3._EET_58_[ECU]___
CTCCAGCTCCGGACACAAACCGCCAAAC
4._EET_58_[ECU]___
CTCCAGCTCCGGACACAAACCGCCAAAC
5._EET_58_[ECU]___
CTCCAGCTCCGGACACAAACCGCCAAAC
6._EET_58_[ECU]___
CTCCAGCTCCGGACACAAACCGCCAAAC
7._EET_58_[ECU]___
CTCCAGCTCCGGACACAAACCGCCAAAC
8._EET_58_[ECU]___
____AGCT__________ACCG______
9._EET_58_[ECU]___
____AGCT__________ACCG______
10._EET_58_[ECU]___
____AGCT__________ACCG______
11._EET_58_[ECU]___
____AGCT__________ACCG______
12._EET_58_[ECU]___
____AGCT__________ACCG______
13._EET_58_[ECU]___
____AGCT__________ACCG______
14._EET_58_[ECU]___
____AGCT__________ACCG______
15._EET_58_[ECU]___
____AGCT__________ACCG______
16._EET_58_[ECU]___
____AGCT__________ACCG______
17._EET_58_[ECU]___
CTCCAGCTCCGGACACAAACCGCCAAAC
18._EET_58_[ECU]___
____AGCT__________ACCG______
19._EET_58_[ECU]___
____AGCT__________ACCG______
20._EET_58_[ECU]___
____AG____________ACCG____AC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
1._EET_58_[ECU]___
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
2._EET_58_[ECU]___
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
3._EET_58_[ECU]___
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
4._EET_58_[ECU]___
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
5._EET_58_[ECU]___
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
6._EET_58_[ECU]___
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
7._EET_58_[ECU]___
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
8._EET_58_[ECU]___
TTTTCT__GG__CCGTCT____X_XX_XX_X
9._EET_58_[ECU]___
TTTTCT__GG__CCGTCT____X_XX_XX_X
10._EET_58_[ECU]___
TTTTCT__GG__CCGTCT____X_XX_XX_X
11._EET_58_[ECU]___
TTTTCT__GG__CCGTCT____X_XX_XX_X
12._EET_58_[ECU]___
TTTTCT__GG__CCGTCT____X_XX_XX_X
13._EET_58_[ECU]___
TTTTCT__GG__CCGTCT____X_XX_XX_X
14._EET_58_[ECU]___
TTTTCT__GG__CCGTCT____X_XX_XX_X
15._EET_58_[ECU]___
TTTTCT__GG__CCGTCT____X_XX_XX_X
16._EET_58_[ECU]___
TTTTCT__GG__CCGTCT____X_XX_XX_X
17._EET_58_[ECU]___
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
18._EET_58_[ECU]___
TTTTCT__AG__CCGTCT____X_XX_XX_X
19._EET_58_[ECU]___
CTTTCT__AG__CCGTCT____X_XX_XX_X
20._EET_58_[ECU]___
____CT____CT__GT______X_XX_XX_X

Input profile: EET_58_[ECU] GC-08-287-8-59

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._EET_58_[ECU] GC-08-287-8-59

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 1
 Dapeng Zhang, 2016

9._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 3
 Dapeng Zhang, 2016

10._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 4
 Dapeng Zhang, 2016

11._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 5
 Dapeng Zhang, 2016

12._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 6
 Dapeng Zhang, 2016

13._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 7
 Dapeng Zhang, 2016

14._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 8
 Dapeng Zhang, 2016

15._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 9
 Dapeng Zhang, 2016

16._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 10
 Dapeng Zhang, 2016

17._EET_58_[ECU] GC-08-287-8-59

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._EET_58_[ECU]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

19._EET_58_[ECU] RUQ_383

88.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._EET_58_[ECU] RUQ_383

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240