SNP Profiles of IMC 41 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
1._GC-08-275-8-47	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
2._GC-08-275-8-47	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
3._GC-08-275-8-47	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
4._GC-08-275-8-47	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
5._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
6._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
7._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
8._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
9._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
10._IMC_41	AA	__	CC	__	__	__	__	__	CC	CC	GG	__	CC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	GG	CG	CC	GG	TT	AA	TT	GG	AA	AA	CC
1._GC-08-275-8-47	AA	CC	AA	GG	CG	CC	GG	TT	AA	TT	GG	AA	AA	CC
2._GC-08-275-8-47	AA	CC	AA	GG	CG	CC	GG	TT	AA	TT	GG	AA	AA	CC
3._GC-08-275-8-47	AA	CC	AA	GG	CG	CC	GG	TT	AA	TT	GG	AA	AA	CC
4._GC-08-275-8-47	AA	CC	AA	GG	CG	__	GG	TT	AA	TT	GG	AA	AA	CC
5._IMC_41	__	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__
6._IMC_41	__	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__
7._IMC_41	__	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__
8._IMC_41	__	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__
9._IMC_41	__	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__
10._IMC_41	__	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG
1._GC-08-275-8-47	GG	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG
2._GC-08-275-8-47	GG	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG
3._GC-08-275-8-47	GG	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG
4._GC-08-275-8-47	GG	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG
5._IMC_41	GG	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__
6._IMC_41	GG	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__
7._IMC_41	GG	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__
8._IMC_41	GG	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__
9._IMC_41	GG	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__
10._IMC_41	GG	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC
1._GC-08-275-8-47	CC	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC
2._GC-08-275-8-47	CC	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC
3._GC-08-275-8-47	CC	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC
4._GC-08-275-8-47	CC	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC
5._IMC_41	__	__	__	CC	__	__	__	__	__	__	__	__	CC	CC
6._IMC_41	__	__	__	CC	__	__	__	__	__	__	__	__	CC	CC
7._IMC_41	__	__	__	CC	__	__	__	__	__	__	__	__	CC	CC
8._IMC_41	__	__	__	CC	__	__	__	__	__	__	__	__	CC	CC
9._IMC_41	__	__	__	CC	__	__	__	__	__	__	__	__	CC	CC
10._IMC_41	__	__	__	CC	__	__	__	__	__	__	__	__	CC	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	AG	CC	CC	CC	AA	GG	GG	AC	AA	GT	GG	AG	CC
1._GC-08-275-8-47	TT	AG	CC	CC	CC	AA	GG	GG	AC	AA	GT	GG	AG	CC
2._GC-08-275-8-47	TT	AG	CC	CC	CC	__	GG	GG	AC	AA	GT	GG	AG	CC
3._GC-08-275-8-47	TT	AG	CC	CC	CC	__	GG	GG	AC	AA	GT	GG	AG	CC
4._GC-08-275-8-47	TT	AG	CC	CC	CC	__	GG	GG	AC	AA	GT	GG	AG	CC
5._IMC_41	__	__	CC	__	CC	AA	GG	__	AC	AA	GT	GG	__	__
6._IMC_41	__	__	CC	__	CC	AA	GG	__	AC	AA	GT	GG	__	__
7._IMC_41	__	__	CC	__	CC	__	GG	__	AC	AA	GT	GG	__	__
8._IMC_41	__	__	CC	__	CC	__	GG	__	AC	AA	GT	GG	__	__
9._IMC_41	__	__	CC	__	CC	__	GG	__	AC	AA	GT	GG	__	__
10._IMC_41	__	__	__	__	CC	AC	GG	__	AC	AA	GT	GG	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AA	CT	AC	AA	CC	AC	AG	AA	CG	CC	TT	AA	TT
1._GC-08-275-8-47	CC	AA	CT	AC	AA	CC	AC	AG	AA	CG	CC	TT	AA	TT
2._GC-08-275-8-47	CC	AA	CT	AC	AA	CC	AC	AG	AA	CG	CC	TT	AA	TT
3._GC-08-275-8-47	CC	AA	CT	AC	AA	CC	AC	AG	AA	CG	CC	TT	AA	TT
4._GC-08-275-8-47	CC	AA	CT	AC	AA	CC	AC	__	AA	CG	CC	TT	AA	TT
5._IMC_41	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
6._IMC_41	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
7._IMC_41	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
8._IMC_41	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
9._IMC_41	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
10._IMC_41	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	CC	CC	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
1._GC-08-275-8-47	CT	CC	CC	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
2._GC-08-275-8-47	CT	CC	CC	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
3._GC-08-275-8-47	CT	CC	CC	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
4._GC-08-275-8-47	CT	CC	CC	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
5._IMC_41	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
6._IMC_41	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
7._IMC_41	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
8._IMC_41	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
9._IMC_41	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
10._IMC_41	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X

Input profile: IMC_41 GC-08-275-8-47

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

1._IMC_41 GC-08-275-8-47

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._IMC_41 GC-08-275-8-47

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._IMC_41 GC-08-275-8-47

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._IMC_41

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 5

Dapeng Zhang, 2016

6._IMC_41

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 4

Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 3

Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 2

Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._IMC_41

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F418 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240