SNP Profiles of IMC-41   View Data

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 Key

 1234567891011121314
_Input profile
AAACCCACGGGGCTCCCCCCGGTTCCCT
1._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
2._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
3._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
4._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
5._IMC_41
AAACCCAC________CCCCGG__CC__
6._IMC_41
AAACCCAC________CCCCGG__CC__
7._IMC_41
AAACCCAC________CCCCGG__CC__
8._IMC_41
AAACCCAC________CCCCGG__CC__
9._IMC_41
AAACCCAC________CCCCGG__CC__
10._IMC_41
AA__CC__________CCCCGG__CC__
 1516171819202122232425262728
_Input profile
AACCAAGGCGCCGGTTAATTGGAAAACC
1._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
2._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
3._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
4._GC-08-275-8-47
AACCAAGGCG__GGTTAATTGGAAAACC
5._IMC_41
______GG____GG________AAAA__
6._IMC_41
______GG____GG________AAAA__
7._IMC_41
______GG____GG________AAAA__
8._IMC_41
______GG____GG________AAAA__
9._IMC_41
______GG____GG________AAAA__
10._IMC_41
______GG____GG________AAAA__
 2930313233343536373839404142
_Input profile
GGAATTTTAGGGCCAGGTGGTTGGTTGG
1._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
2._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
3._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
4._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
5._IMC_41
GGAA______GG__AGGT____GG____
6._IMC_41
GGAA______GG__AGGT____GG____
7._IMC_41
GGAA______GG__AGGT____GG____
8._IMC_41
GGAA______GG__AGGT____GG____
9._IMC_41
GGAA______GG__AGGT____GG____
10._IMC_41
GGAA______GG__AGGT____GG____
 4344454647484950515253545556
_Input profile
CCGGTTCCAAGGAACCCCGGAAGGCCCC
1._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
2._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
3._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
4._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
5._IMC_41
______CC________________CCCC
6._IMC_41
______CC________________CCCC
7._IMC_41
______CC________________CCCC
8._IMC_41
______CC________________CCCC
9._IMC_41
______CC________________CCCC
10._IMC_41
______CC________________CCCC
 5758596061626364656667686970
_Input profile
TTAGCCCCCCAAGGGGACAAGTGGAGCC
1._GC-08-275-8-47
TTAGCCCCCCAAGGGGACAAGTGGAGCC
2._GC-08-275-8-47
TTAGCCCCCC__GGGGACAAGTGGAGCC
3._GC-08-275-8-47
TTAGCCCCCC__GGGGACAAGTGGAGCC
4._GC-08-275-8-47
TTAGCCCCCC__GGGGACAAGTGGAGCC
5._IMC_41
____CC__CCAAGG__ACAAGTGG____
6._IMC_41
____CC__CCAAGG__ACAAGTGG____
7._IMC_41
____CC__CC__GG__ACAAGTGG____
8._IMC_41
____CC__CC__GG__ACAAGTGG____
9._IMC_41
____CC__CC__GG__ACAAGTGG____
10._IMC_41
________CCACGG__ACAAGTGG____
 7172737475767778798081828384
_Input profile
CCAACTACAACCACAGAACGCCTTAATT
1._GC-08-275-8-47
CCAACTACAACCACAGAACGCCTTAATT
2._GC-08-275-8-47
CCAACTACAACCACAGAACGCCTTAATT
3._GC-08-275-8-47
CCAACTACAACCACAGAACGCCTTAATT
4._GC-08-275-8-47
CCAACTACAACCAC__AACGCCTTAATT
5._IMC_41
__AACT__________AACG______TT
6._IMC_41
__AACT__________AACG______TT
7._IMC_41
__AACT__________AACG______TT
8._IMC_41
__AACT__________AACG______TT
9._IMC_41
__AACT__________AACG______TT
10._IMC_41
__AACT__________AACG______TT
 85868788899091929394    
_Input profile
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
1._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
2._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
3._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
4._GC-08-275-8-47
CTCCCCAACCCCTTTTAAGGX_XX_XX_XX_X
5._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
6._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
7._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
8._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
9._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X
10._IMC_41
CTCC__AA__CCTTTT____X_XX_XX_XX_X

Input profile: IMC_41 GC-08-275-8-47

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._IMC_41 GC-08-275-8-47

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_41

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

6._IMC_41

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_41

98.6 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240