SNP Profiles of IMC 41   View Data

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 Key

 1234567891011121314
_Input profile
AAACCCACGGGGCTCCCCCCGGTTCCCT
1._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
2._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
3._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
4._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
5._IMC_41
AAACCCAC____CCCCGG_CC_
6._IMC_41
AAACCCAC____CCCCGG_CC_
7._IMC_41
AAACCCAC____CCCCGG_CC_
8._IMC_41
AAACCCAC____CCCCGG_CC_
9._IMC_41
AAACCCAC____CCCCGG_CC_
10._IMC_41
AA_CC_____CCCCGG_CC_
 1516171819202122232425262728
_Input profile
AACCAAGGCGCCGGTTAATTGGAAAACC
1._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
2._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
3._GC-08-275-8-47
AACCAAGGCGCCGGTTAATTGGAAAACC
4._GC-08-275-8-47
AACCAAGGCG_GGTTAATTGGAAAACC
5._IMC_41
___GG__GG____AAAA_
6._IMC_41
___GG__GG____AAAA_
7._IMC_41
___GG__GG____AAAA_
8._IMC_41
___GG__GG____AAAA_
9._IMC_41
___GG__GG____AAAA_
10._IMC_41
___GG__GG____AAAA_
 2930313233343536373839404142
_Input profile
GGAATTTTAGGGCCAGGTGGTTGGTTGG
1._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
2._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
3._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
4._GC-08-275-8-47
GGAATTTTAGGGCCAGGTGGTTGGTTGG
5._IMC_41
GGAA___GG_AGGT__GG__
6._IMC_41
GGAA___GG_AGGT__GG__
7._IMC_41
GGAA___GG_AGGT__GG__
8._IMC_41
GGAA___GG_AGGT__GG__
9._IMC_41
GGAA___GG_AGGT__GG__
10._IMC_41
GGAA___GG_AGGT__GG__
 4344454647484950515253545556
_Input profile
CCGGTTCCAAGGAACCCCGGAAGGCCCC
1._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
2._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
3._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
4._GC-08-275-8-47
CCGGTTCCAAGGAACCCCGGAAGGCCCC
5._IMC_41
___CC________CCCC
6._IMC_41
___CC________CCCC
7._IMC_41
___CC________CCCC
8._IMC_41
___CC________CCCC
9._IMC_41
___CC________CCCC
10._IMC_41
___CC________CCCC
 5758596061626364656667686970
_Input profile
TTAGCCCCCCGGGGACAAGTGGAGCCCC
1._GC-08-275-8-47
TTAGCCCCCCGGGGACAAGTGGAGCCCC
2._GC-08-275-8-47
TTAGCCCCCCGGGGACAAGTGGAGCCCC
3._GC-08-275-8-47
TTAGCCCCCCGGGGACAAGTGGAGCCCC
4._GC-08-275-8-47
TTAGCCCCCCGGGGACAAGTGGAGCCCC
5._IMC_41
__CC_CCGG_ACAAGTGG___
6._IMC_41
__CC_CCGG_ACAAGTGG___
7._IMC_41
__CC_CCGG_ACAAGTGG___
8._IMC_41
__CC_CCGG_ACAAGTGG___
9._IMC_41
__CC_CCGG_ACAAGTGG___
10._IMC_41
____CCGG_ACAAGTGG___
 7172737475767778798081828384
_Input profile
AACTACAACCACAGAACGCCTTAATTCT
1._GC-08-275-8-47
AACTACAACCACAGAACGCCTTAATTCT
2._GC-08-275-8-47
AACTACAACCACAGAACGCCTTAATTCT
3._GC-08-275-8-47
AACTACAACCACAGAACGCCTTAATTCT
4._GC-08-275-8-47
AACTACAACCAC_AACGCCTTAATTCT
5._IMC_41
AACT_____AACG___TTCT
6._IMC_41
AACT_____AACG___TTCT
7._IMC_41
AACT_____AACG___TTCT
8._IMC_41
AACT_____AACG___TTCT
9._IMC_41
AACT_____AACG___TTCT
10._IMC_41
AACT_____AACG___TTCT
 858687888990919293     
_Input profile
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-275-8-47
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-275-8-47
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-275-8-47
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-275-8-47
CCCCAACCCCTTTTAAGGX_XX_XX_XX_XX_X
5._IMC_41
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
6._IMC_41
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
7._IMC_41
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
8._IMC_41
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
9._IMC_41
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
10._IMC_41
CC_AA_CCTTTT__X_XX_XX_XX_XX_X

Input profile: IMC_41 GC-08-275-8-47

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._IMC_41 GC-08-275-8-47

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

6._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_41

identical
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240