SNP Profiles of IMC-41   View Data

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 Key

 1234567891011121314
_Input profile
AAACCCACGGGGCTCCCCCCGGTTCCCT
1._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
2._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
3._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
4._GC-08-275-8-47
AAACCCACGGGGCTCCCCCCGGTTCCCT
5._IMC_41
AAACCCAC________CCCCGG__CC__
6._IMC_41
AAACCCAC________CCCCGG__CC__
7._IMC_41
AAACCCAC________CCCCGG__CC__
8._IMC_41
AAACCCAC________CCCCGG__CC__
9._IMC_41
AAACCCAC________CCCCGG__CC__
10._IMC_41
AA__CC__________CCCCGG__CC__
 1516171819202122232425262728
_Input profile
AACCAAGGCGGGTTAATTGGAAAACCGG
1._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
2._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
3._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
4._GC-08-275-8-47
AACCAAGGCGGGTTAATTGGAAAACCGG
5._IMC_41
______GG__GG________AAAA__GG
6._IMC_41
______GG__GG________AAAA__GG
7._IMC_41
______GG__GG________AAAA__GG
8._IMC_41
______GG__GG________AAAA__GG
9._IMC_41
______GG__GG________AAAA__GG
10._IMC_41
______GG__GG________AAAA__GG
 2930313233343536373839404142
_Input profile
AATTTTAGGGCCAGGTGGTTGGTTGGCC
1._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
2._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
3._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
4._GC-08-275-8-47
AATTTTAGGGCCAGGTGGTTGGTTGGCC
5._IMC_41
AA______GG__AGGT____GG______
6._IMC_41
AA______GG__AGGT____GG______
7._IMC_41
AA______GG__AGGT____GG______
8._IMC_41
AA______GG__AGGT____GG______
9._IMC_41
AA______GG__AGGT____GG______
10._IMC_41
AA______GG__AGGT____GG______
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGAAGGCCCCTT
1._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
2._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
3._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
4._GC-08-275-8-47
GGTTCCAAGGAACCCCGGAAGGCCCCTT
5._IMC_41
____CC________________CCCC__
6._IMC_41
____CC________________CCCC__
7._IMC_41
____CC________________CCCC__
8._IMC_41
____CC________________CCCC__
9._IMC_41
____CC________________CCCC__
10._IMC_41
____CC________________CCCC__
 5758596061626364656667686970
_Input profile
AGCCCCCCGGGGACAAGTGGAGCCCCAA
1._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
2._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
3._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
4._GC-08-275-8-47
AGCCCCCCGGGGACAAGTGGAGCCCCAA
5._IMC_41
__CC__CCGG__ACAAGTGG______AA
6._IMC_41
__CC__CCGG__ACAAGTGG______AA
7._IMC_41
__CC__CCGG__ACAAGTGG______AA
8._IMC_41
__CC__CCGG__ACAAGTGG______AA
9._IMC_41
__CC__CCGG__ACAAGTGG______AA
10._IMC_41
______CCGG__ACAAGTGG______AA
 7172737475767778798081828384
_Input profile
CTACAACCACAACGCCTTAATTCTCCCC
1._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
2._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
3._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
4._GC-08-275-8-47
CTACAACCACAACGCCTTAATTCTCCCC
5._IMC_41
CT________AACG______TTCTCC__
6._IMC_41
CT________AACG______TTCTCC__
7._IMC_41
CT________AACG______TTCTCC__
8._IMC_41
CT________AACG______TTCTCC__
9._IMC_41
CT________AACG______TTCTCC__
10._IMC_41
CT________AACG______TTCTCC__
 85868788899091       
_Input profile
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
1._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
2._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
3._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
4._GC-08-275-8-47
AACCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
5._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
6._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
7._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
8._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
9._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X
10._IMC_41
AA__CCTTTT____X_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_41 GC-08-275-8-47

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

6._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_41

identical
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP430 80TcSNP823
81TcSNP619 82TcSNP994 83TcSNP1144 84TcSNP1156 85TcSNP469
86TcSNP999 87TcSNP242 88TcSNP1253 89TcSNP1414 90TcSNP154
91TcSNP240