SNP Profiles of C SUL 7   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACTACAGAATTCTCTCTGGCTCTCTAA
1._C_SUL_7___
AACTACAGAATTCTCTCTGGCTCTCTAA
2._C_SUL_7___
AACTACAGAATTCTCTCTGGCTCTCTAA
3._C_SUL_7___
AACTACAGAATTCTCTCTGGCTCTCTAA
4._C_SUL_7___
AACTACAGAATTCTCTCTGGCTCTCTAA
5._C_SUL_7___
AACTAC________CTCTGG__CT____
6._C_SUL_7___
AACTAC________CTCTGG__CT____
7._C_SUL_7___
AACTAC________CTCTGG__CT____
8._C_SUL_7___
AACTAC________CTCTGG__CT____
9._C_SUL_7___
AACTAC________CTCTGG__CT____
10._C_SUL_7___
AACCCC________CCCTGG__TT____
11._C_SUL_7___
AACCCC________CCCTGG__TT____
12._C_SUL_7___
AACCCC________CCCTGG__TT____
13._C_SUL_7___
AACCCC________CCCTGG__TT____
14._C_SUL_7___
AACCCC________CCCTGG__TT____
15._C_SUL_7___
AACCCC________CCCTGG__TT____
16._C_SUL_7___
ATCTCC________CCCTGG__CT____
17._C_SUL_7___
AACCCCAGAACTTTCCCTGGTTTTTTAT
18._C_SUL_7___
AACCCCAGAACTTTCCCTGGTTTTTTAT
19._C_SUL_7___
AACCCCAGAACTTTCCCTGGTTTTTTAT
20._C_SUL_7___
AACCCCAGAACTTTCCCTGGTTTTTTAT
21._C_SUL_7___
AACCCCAGAACTTTCCCTGGTTTTTTAT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACAAAGCGCGCGCCAGCTAGATAACGCG
1._C_SUL_7___
ACAAAGCGCGCGCCAGCTAGATAACGCG
2._C_SUL_7___
ACAAAGCGCGCGCCAGCTAGATAACGCG
3._C_SUL_7___
ACAAAGCGCGCGCCAGCTAGATAACGCG
4._C_SUL_7___
ACAAAGCGCGCGCCAGCTAGATAACGCG
5._C_SUL_7___
____AG____CG________ATAA__CG
6._C_SUL_7___
____AG____CG________ATAA__CG
7._C_SUL_7___
____AG____CG________ATAA__CG
8._C_SUL_7___
____AG____CG________ATAA__CG
9._C_SUL_7___
____AG____CG________ATAA__CG
10._C_SUL_7___
____GG____GG________AAAA__CG
11._C_SUL_7___
____GG____GG________AAAA__CG
12._C_SUL_7___
____GG____GG________AAAA__CG
13._C_SUL_7___
____GG____GG________AAAA__CG
14._C_SUL_7___
____GG____GG________AAAA__CG
15._C_SUL_7___
____GG____GG________AAAA__CG
16._C_SUL_7___
____AG____GG________ATAT__GG
17._C_SUL_7___
AAAAGGGGCGGGCCAATTGGAAAAGGCG
18._C_SUL_7___
AAAAGGGGCGGGCCAATTGGAAAAGGCG
19._C_SUL_7___
AAAAGGGGCGGGCCAATTGGAAAAGGCG
20._C_SUL_7___
AAAAGGGGCGGGCCAATTGGAAAAGGCG
21._C_SUL_7___
AAAAGGGGCGGGCCAATTGGAAAAGGCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTGTGGCCCCAAGGGTTTGGCCAGCG
1._C_SUL_7___
ATTTGTGGCCCCAAGGGTTTGGCCAGCG
2._C_SUL_7___
ATTTGTGGCCCCAAGGGTTTGGCCAGCG
3._C_SUL_7___
ATTTGTGGCCCCAAGGGTTTGGCCAGCG
4._C_SUL_7___
ATTTGTGGCCCCAAGGGTTTGG__AGCG
5._C_SUL_7___
AT______CC__AAGG____GG______
6._C_SUL_7___
AT______CC__AAGG____GG______
7._C_SUL_7___
AT______CC__AAGG____GG______
8._C_SUL_7___
AT______CC__AAGG____GG______
9._C_SUL_7___
AT______CC__AAGG____GG______
10._C_SUL_7___
AT______CC__AAGG____AA______
11._C_SUL_7___
AT______CC__AAGG____AA______
12._C_SUL_7___
AT______CC__AAGG____AA______
13._C_SUL_7___
AT______CC__AAGG____AA______
14._C_SUL_7___
AT______CC__AAGG____AA______
15._C_SUL_7___
AT______CC__AAGG____AA______
16._C_SUL_7___
AT______CG__AGGT____AG______
17._C_SUL_7___
ATTTTTAGCCCCAAGGGGTTAACCGGCC
18._C_SUL_7___
ATTTTTAGCCCCAAGGGGTTAACCGGCC
19._C_SUL_7___
ATTTTTAGCCCCAAGGGGTTAACCGGCC
20._C_SUL_7___
ATTTTTAGCCCCAAGGGGTTAACCGGCC
21._C_SUL_7___
ATTTTTAGCCCCAAGGGGTTAACCGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTATCCAGAAAGCTACAGAGGGTTCCGT
1._C_SUL_7___
GTATCCAGAAAGCTACAGAGGGTTCCGT
2._C_SUL_7___
GTATCCAGAAAGCTACAGAGGGTTCCGT
3._C_SUL_7___
GTATCCAGAAAGCTACAGAGGGTTCCGT
4._C_SUL_7___
GTATCCAGAAAGCTACAGAGGGTTCCGT
5._C_SUL_7___
____CC________________TTCC__
6._C_SUL_7___
____CC________________TTCC__
7._C_SUL_7___
____CC________________TTCC__
8._C_SUL_7___
____CC________________TTCC__
9._C_SUL_7___
____CC________________TTCC__
10._C_SUL_7___
____TT________________TTCC__
11._C_SUL_7___
____TT________________TTCC__
12._C_SUL_7___
____TT________________TTCC__
13._C_SUL_7___
____TT________________TTCC__
14._C_SUL_7___
____TT________________TTCC__
15._C_SUL_7___
____TT________________TTCC__
16._C_SUL_7___
____CT________________CTCT__
17._C_SUL_7___
GGTTTTAAGGAACCACGGAAGGTTCCTT
18._C_SUL_7___
GGTTTTAAGGAACCACGGAAGGTTCCTT
19._C_SUL_7___
GGTTTTAAGGAACCACGGAAGGTTCCTT
20._C_SUL_7___
GGTTTTAAGGAACCACGGAAGGTTCCTT
21._C_SUL_7___
GGTTTTAAGGAACCACGGAAGGTTCCTT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCGCTTTACCGAGACAAGGGGAACTCG
1._C_SUL_7___
AGCGCTTTACCGAGACAAGGGGAACTCG
2._C_SUL_7___
AGCGCTTTACCGAGACAAGGGGAACTCG
3._C_SUL_7___
AGCGCTTTACCGAGACAAGGGGAACTCG
4._C_SUL_7___
AGCGCTTT__CGAGACAAGGGGAACTCG
5._C_SUL_7___
__CG__TTACCG__ACAAGGGG______
6._C_SUL_7___
__CG__TTACCG__ACAAGGGG______
7._C_SUL_7___
__CG__TTACCG__ACAAGGGG______
8._C_SUL_7___
__CG__TTACCG__ACAAGGGG______
9._C_SUL_7___
__CG__TT__CG__ACAAGGGG______
10._C_SUL_7___
__CG__CTCCGG__ACAAGGGT______
11._C_SUL_7___
__CG__CTCCGG__ACAAGGGT______
12._C_SUL_7___
__CG__CTCCGG__ACAAGGGT______
13._C_SUL_7___
__CG__CTCCGG__ACAAGGGT______
14._C_SUL_7___
__CG__CTCCGG__ACAAGGGT______
15._C_SUL_7___
__CG__CTCCGG__ACAAGGGT______
16._C_SUL_7___
__CG__CTCCCG__CCAAGTGG______
17._C_SUL_7___
GGCGCCCTCCGGGGACAAGGGTAACCCC
18._C_SUL_7___
GGCGCCCTCCGGGGACAAGGGTAACCCC
19._C_SUL_7___
GGCGCCCTCCGGGGACAAGGGTAACCCC
20._C_SUL_7___
GGCGCCCTCCGGGGACAAGGGTAACCCC
21._C_SUL_7___
GGCGCCCTCCGGGGACAAGGGTAACCCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AGCTACGGCCACAGACCGCCATCCCTCC
1._C_SUL_7___
AGCTACGGCCACAGACCGCCATCCCTCC
2._C_SUL_7___
AGCTACGGCCACAGACCGCCATCCCTCC
3._C_SUL_7___
AGCTACGGCCACAGACCGCCATCCCTCC
4._C_SUL_7___
AGCTACGGCCACAGACCGCCATCCCTCC
5._C_SUL_7___
AGCT__________ACCG______CTCC
6._C_SUL_7___
AGCT__________ACCG______CTCC
7._C_SUL_7___
AGCT__________ACCG______CTCC
8._C_SUL_7___
AGCT__________ACCG______CTCC
9._C_SUL_7___
AGCT__________ACCG______CTCC
10._C_SUL_7___
AGCT__________ACCC______CCCC
11._C_SUL_7___
AACT__________ACCC______CCCC
12._C_SUL_7___
AACT__________ACCC______CCCC
13._C_SUL_7___
AACT__________ACCC______CCCC
14._C_SUL_7___
AACT__________ACCC______CCCC
15._C_SUL_7___
AA____________ACCC______CC__
16._C_SUL_7___
AGCT__________ACCG______TTTT
17._C_SUL_7___
AACTCCGGCCCCGGACCCCCAAAACCCC
18._C_SUL_7___
AACTCCGGCCCCGGACCCCCAAAACCCC
19._C_SUL_7___
AACTCCGGCCCCGGACCCCCAAAACCCC
20._C_SUL_7___
AACTCCGGCCCCGGACCCCCAAAACCCC
21._C_SUL_7___
AA__CCGGCCCCGGACCCCCAAAACC__
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
1._C_SUL_7___
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
2._C_SUL_7___
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
3._C_SUL_7___
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
4._C_SUL_7___
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
5._C_SUL_7___
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
6._C_SUL_7___
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
7._C_SUL_7___
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
8._C_SUL_7___
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
9._C_SUL_7___
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
10._C_SUL_7___
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
11._C_SUL_7___
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
12._C_SUL_7___
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
13._C_SUL_7___
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
14._C_SUL_7___
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
15._C_SUL_7___
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
16._C_SUL_7___
CT__AG__CCGTCT____X_XX_XX_XX_XX_X
17._C_SUL_7___
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X
18._C_SUL_7___
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X
19._C_SUL_7___
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X
20._C_SUL_7___
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X
21._C_SUL_7___
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X

Input profile: C_SUL_7 GC-08-261-8-29

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._C_SUL_7 GC-08-261-8-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._C_SUL_7 GC-08-261-8-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._C_SUL_7 GC-08-261-8-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._C_SUL_7

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 5
 Dapeng Zhang, 2016

6._C_SUL_7

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 3
 Dapeng Zhang, 2016

7._C_SUL_7

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 4
 Dapeng Zhang, 2016

8._C_SUL_7

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 7
 Dapeng Zhang, 2016

9._C_SUL_7

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 2
 Dapeng Zhang, 2016

10._C_SUL_7

76.9 %
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P95 583
 Dapeng Zhang, 2016

11._C_SUL_7

75.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 1
 Dapeng Zhang, 2016

12._C_SUL_7

75.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 5
 Dapeng Zhang, 2016

13._C_SUL_7

75.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 6
 Dapeng Zhang, 2016

14._C_SUL_7

75.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 7
 Dapeng Zhang, 2016

15._C_SUL_7

74.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 3
 Dapeng Zhang, 2016

16._C_SUL_7

69.2 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._C_SUL_7 NA

68.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._C_SUL_7 NA

68.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

19._C_SUL_7 NA

68.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._C_SUL_7 NA

68.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

21._C_SUL_7 NA

68.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240