SNP Profiles of C SUL 7   View Data

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_Input profile
AACTACAGAATTCTCTCTGGCTCTCTAA
1._GC-08-261-8-29
AACTACAGAATTCTCTCTGGCTCTCTAA
2._GC-08-261-8-29
AACTACAGAATTCTCTCTGGCTCTCTAA
3._GC-08-261-8-29
AACTACAGAATTCTCTCTGGCTCTCTAA
4._GC-08-261-8-29
AACTACAGAATTCTCTCTGGCTCTCTAA
5._C_SUL_7
AACTAC________CTCTGG__CT____
6._C_SUL_7
AACTAC________CTCTGG__CT____
7._C_SUL_7
AACTAC________CTCTGG__CT____
8._C_SUL_7
AACTAC________CTCTGG__CT____
9._C_SUL_7
AACTAC________CTCTGG__CT____
10._C_SUL_7
AACCCC________CCCTGG__TT____
11._C_SUL_7
AACCCC________CCCTGG__TT____
12._C_SUL_7
AACCCC________CCCTGG__TT____
13._C_SUL_7
AACCCC________CCCTGG__TT____
14._C_SUL_7
AACCCC________CCCTGG__TT____
15._C_SUL_7
AACCCC________CCCTGG__TT____
16._C_SUL_7
ATCTCC________CCCTGG__CT____
17._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
18._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
19._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
20._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
21._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
 1516171819202122232425262728
_Input profile
ACAAAGCGCGCGCCAGCTAGATAACGCG
1._GC-08-261-8-29
ACAAAGCGCGCGCCAGCTAGATAACGCG
2._GC-08-261-8-29
ACAAAGCGCGCGCCAGCTAGATAACGCG
3._GC-08-261-8-29
ACAAAGCGCGCGCCAGCTAGATAACGCG
4._GC-08-261-8-29
ACAAAGCGCGCGCCAGCTAGATAACGCG
5._C_SUL_7
____AG____CG________ATAA__CG
6._C_SUL_7
____AG____CG________ATAA__CG
7._C_SUL_7
____AG____CG________ATAA__CG
8._C_SUL_7
____AG____CG________ATAA__CG
9._C_SUL_7
____AG____CG________ATAA__CG
10._C_SUL_7
____GG____GG________AAAA__CG
11._C_SUL_7
____GG____GG________AAAA__CG
12._C_SUL_7
____GG____GG________AAAA__CG
13._C_SUL_7
____GG____GG________AAAA__CG
14._C_SUL_7
____GG____GG________AAAA__CG
15._C_SUL_7
____GG____GG________AAAA__CG
16._C_SUL_7
____AG____GG________ATAT__GG
17._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
18._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
19._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
20._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
21._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
 2930313233343536373839404142
_Input profile
ATTTGTGGCCCCAAGGGTTTGGCCAGCG
1._GC-08-261-8-29
ATTTGTGGCCCCAAGGGTTTGGCCAGCG
2._GC-08-261-8-29
ATTTGTGGCCCCAAGGGTTTGGCCAGCG
3._GC-08-261-8-29
ATTTGTGGCCCCAAGGGTTTGGCCAGCG
4._GC-08-261-8-29
ATTTGTGGCCCCAAGGGTTTGG__AGCG
5._C_SUL_7
AT______CC__AAGG____GG______
6._C_SUL_7
AT______CC__AAGG____GG______
7._C_SUL_7
AT______CC__AAGG____GG______
8._C_SUL_7
AT______CC__AAGG____GG______
9._C_SUL_7
AT______CC__AAGG____GG______
10._C_SUL_7
AT______CC__AAGG____AA______
11._C_SUL_7
AT______CC__AAGG____AA______
12._C_SUL_7
AT______CC__AAGG____AA______
13._C_SUL_7
AT______CC__AAGG____AA______
14._C_SUL_7
AT______CC__AAGG____AA______
15._C_SUL_7
AT______CC__AAGG____AA______
16._C_SUL_7
AT______CG__AGGT____AG______
17._NA
ATTTTTAGCCCCAAGGGGTTAACCGGCC
18._NA
ATTTTTAGCCCCAAGGGGTTAACCGGCC
19._NA
ATTTTTAGCCCCAAGGGGTTAACCGGCC
20._NA
ATTTTTAGCCCCAAGGGGTTAACCGGCC
21._NA
ATTTTTAGCCCCAAGGGGTTAACCGGCC
 4344454647484950515253545556
_Input profile
GTATCCAGAAAGCTACAGAGGGTTCCGT
1._GC-08-261-8-29
GTATCCAGAAAGCTACAGAGGGTTCCGT
2._GC-08-261-8-29
GTATCCAGAAAGCTACAGAGGGTTCCGT
3._GC-08-261-8-29
GTATCCAGAAAGCTACAGAGGGTTCCGT
4._GC-08-261-8-29
GTATCCAGAAAGCTACAGAGGGTTCCGT
5._C_SUL_7
____CC________________TTCC__
6._C_SUL_7
____CC________________TTCC__
7._C_SUL_7
____CC________________TTCC__
8._C_SUL_7
____CC________________TTCC__
9._C_SUL_7
____CC________________TTCC__
10._C_SUL_7
____TT________________TTCC__
11._C_SUL_7
____TT________________TTCC__
12._C_SUL_7
____TT________________TTCC__
13._C_SUL_7
____TT________________TTCC__
14._C_SUL_7
____TT________________TTCC__
15._C_SUL_7
____TT________________TTCC__
16._C_SUL_7
____CT________________CTCT__
17._NA
GGTTTTAAGGAACCACGGAAGGTTCCTT
18._NA
GGTTTTAAGGAACCACGGAAGGTTCCTT
19._NA
GGTTTTAAGGAACCACGGAAGGTTCCTT
20._NA
GGTTTTAAGGAACCACGGAAGGTTCCTT
21._NA
GGTTTTAAGGAACCACGGAAGGTTCCTT
 5758596061626364656667686970
_Input profile
AGCGCTTTACCGAGACAAGGGGAACTCG
1._GC-08-261-8-29
AGCGCTTTACCGAGACAAGGGGAACTCG
2._GC-08-261-8-29
AGCGCTTTACCGAGACAAGGGGAACTCG
3._GC-08-261-8-29
AGCGCTTTACCGAGACAAGGGGAACTCG
4._GC-08-261-8-29
AGCGCTTT__CGAGACAAGGGGAACTCG
5._C_SUL_7
__CG__TTACCG__ACAAGGGG______
6._C_SUL_7
__CG__TTACCG__ACAAGGGG______
7._C_SUL_7
__CG__TTACCG__ACAAGGGG______
8._C_SUL_7
__CG__TTACCG__ACAAGGGG______
9._C_SUL_7
__CG__TT__CG__ACAAGGGG______
10._C_SUL_7
__CG__CTCCGG__ACAAGGGT______
11._C_SUL_7
__CG__CTCCGG__ACAAGGGT______
12._C_SUL_7
__CG__CTCCGG__ACAAGGGT______
13._C_SUL_7
__CG__CTCCGG__ACAAGGGT______
14._C_SUL_7
__CG__CTCCGG__ACAAGGGT______
15._C_SUL_7
__CG__CTCCGG__ACAAGGGT______
16._C_SUL_7
__CG__CTCCCG__CCAAGTGG______
17._NA
GGCGCCCTCCGGGGACAAGGGTAACCCC
18._NA
GGCGCCCTCCGGGGACAAGGGTAACCCC
19._NA
GGCGCCCTCCGGGGACAAGGGTAACCCC
20._NA
GGCGCCCTCCGGGGACAAGGGTAACCCC
21._NA
GGCGCCCTCCGGGGACAAGGGTAACCCC
 7172737475767778798081828384
_Input profile
AGCTACGGCCACAGACCGCCATCCCTCC
1._GC-08-261-8-29
AGCTACGGCCACAGACCGCCATCCCTCC
2._GC-08-261-8-29
AGCTACGGCCACAGACCGCCATCCCTCC
3._GC-08-261-8-29
AGCTACGGCCACAGACCGCCATCCCTCC
4._GC-08-261-8-29
AGCTACGGCCACAGACCGCCATCCCTCC
5._C_SUL_7
AGCT__________ACCG______CTCC
6._C_SUL_7
AGCT__________ACCG______CTCC
7._C_SUL_7
AGCT__________ACCG______CTCC
8._C_SUL_7
AGCT__________ACCG______CTCC
9._C_SUL_7
AGCT__________ACCG______CTCC
10._C_SUL_7
AGCT__________ACCC______CCCC
11._C_SUL_7
AACT__________ACCC______CCCC
12._C_SUL_7
AACT__________ACCC______CCCC
13._C_SUL_7
AACT__________ACCC______CCCC
14._C_SUL_7
AACT__________ACCC______CCCC
15._C_SUL_7
AA____________ACCC______CC__
16._C_SUL_7
AGCT__________ACCG______TTTT
17._NA
AACTCCGGCCCCGGACCCCCAAAACCCC
18._NA
AACTCCGGCCCCGGACCCCCAAAACCCC
19._NA
AACTCCGGCCCCGGACCCCCAAAACCCC
20._NA
AACTCCGGCCCCGGACCCCCAAAACCCC
21._NA
AA__CCGGCCCCGGACCCCCAAAACC__
 858687888990919293     
_Input profile
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
1._GC-08-261-8-29
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
2._GC-08-261-8-29
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
3._GC-08-261-8-29
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
4._GC-08-261-8-29
CCCTGGCCCTGGCTATGGX_XX_XX_XX_XX_X
5._C_SUL_7
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
6._C_SUL_7
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
7._C_SUL_7
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
8._C_SUL_7
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
9._C_SUL_7
CC__GG__CTGGCT____X_XX_XX_XX_XX_X
10._C_SUL_7
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
11._C_SUL_7
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
12._C_SUL_7
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
13._C_SUL_7
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
14._C_SUL_7
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
15._C_SUL_7
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
16._C_SUL_7
CT__AG__CCGTCT____X_XX_XX_XX_XX_X
17._NA
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X
18._NA
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X
19._NA
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X
20._NA
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X
21._NA
CCCCGGCCCTGGCCTTGGX_XX_XX_XX_XX_X

Input profile: C_SUL_7 GC-08-261-8-29

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._C_SUL_7 GC-08-261-8-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._C_SUL_7 GC-08-261-8-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._C_SUL_7 GC-08-261-8-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._C_SUL_7

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 5
 Dapeng Zhang, 2016

6._C_SUL_7

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 3
 Dapeng Zhang, 2016

7._C_SUL_7

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 4
 Dapeng Zhang, 2016

8._C_SUL_7

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 7
 Dapeng Zhang, 2016

9._C_SUL_7

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._C_SUL_7

76.9 %
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P95 583
 Dapeng Zhang, 2016

11._C_SUL_7

75.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._C_SUL_7

75.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 5
 Dapeng Zhang, 2016

13._C_SUL_7

75.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 6
 Dapeng Zhang, 2016

14._C_SUL_7

75.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 7
 Dapeng Zhang, 2016

15._C_SUL_7

74.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 3
 Dapeng Zhang, 2016

16._C_SUL_7

69.2 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._C_SUL_7 NA

68.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._C_SUL_7 NA

68.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

19._C_SUL_7 NA

68.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._C_SUL_7 NA

68.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

21._C_SUL_7 NA

68.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240