SNP Profiles of C SUL 7   View Data

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_Input profile
AACTACAGAATTCTCTCTGGCTCTCTAA
1._GC-08-261-8-29
AACTACAGAATTCTCTCTGGCTCTCTAA
2._GC-08-261-8-29
AACTACAGAATTCTCTCTGGCTCTCTAA
3._GC-08-261-8-29
AACTACAGAATTCTCTCTGGCTCTCTAA
4._GC-08-261-8-29
AACTACAGAATTCTCTCTGGCTCTCTAA
5._C_SUL_7
AACTAC________CTCTGG__CT____
6._C_SUL_7
AACTAC________CTCTGG__CT____
7._C_SUL_7
AACTAC________CTCTGG__CT____
8._C_SUL_7
AACTAC________CTCTGG__CT____
9._C_SUL_7
AACTAC________CTCTGG__CT____
10._C_SUL_7
AACCCC________CCCTGG__TT____
11._C_SUL_7
AACCCC________CCCTGG__TT____
12._C_SUL_7
AACCCC________CCCTGG__TT____
13._C_SUL_7
AACCCC________CCCTGG__TT____
14._C_SUL_7
AACCCC________CCCTGG__TT____
15._C_SUL_7
AACCCC________CCCTGG__TT____
16._C_SUL_7
ATCTCC________CCCTGG__CT____
17._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
18._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
19._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
20._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
21._NA
AACCCCAGAACTTTCCCTGGTTTTTTAT
 1516171819202122232425262728
_Input profile
ACAAAGCGCGCGCCAGCTAGATAACGCG
1._GC-08-261-8-29
ACAAAGCGCGCGCCAGCTAGATAACGCG
2._GC-08-261-8-29
ACAAAGCGCGCGCCAGCTAGATAACGCG
3._GC-08-261-8-29
ACAAAGCGCGCGCCAGCTAGATAACGCG
4._GC-08-261-8-29
ACAAAGCGCGCGCCAGCTAGATAACGCG
5._C_SUL_7
____AG____CG________ATAA__CG
6._C_SUL_7
____AG____CG________ATAA__CG
7._C_SUL_7
____AG____CG________ATAA__CG
8._C_SUL_7
____AG____CG________ATAA__CG
9._C_SUL_7
____AG____CG________ATAA__CG
10._C_SUL_7
____GG____GG________AAAA__CG
11._C_SUL_7
____GG____GG________AAAA__CG
12._C_SUL_7
____GG____GG________AAAA__CG
13._C_SUL_7
____GG____GG________AAAA__CG
14._C_SUL_7
____GG____GG________AAAA__CG
15._C_SUL_7
____GG____GG________AAAA__CG
16._C_SUL_7
____AG____GG________ATAT__GG
17._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
18._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
19._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
20._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
21._NA
AAAAGGGGCGGGCCAATTGGAAAAGGCG
 2930313233343536373839404142
_Input profile
ATTTGTGGCCCCAAGGGTTTGGAGCGGT
1._GC-08-261-8-29
ATTTGTGGCCCCAAGGGTTTGGAGCGGT
2._GC-08-261-8-29
ATTTGTGGCCCCAAGGGTTTGGAGCGGT
3._GC-08-261-8-29
ATTTGTGGCCCCAAGGGTTTGGAGCGGT
4._GC-08-261-8-29
ATTTGTGGCCCCAAGGGTTTGGAGCGGT
5._C_SUL_7
AT______CC__AAGG____GG______
6._C_SUL_7
AT______CC__AAGG____GG______
7._C_SUL_7
AT______CC__AAGG____GG______
8._C_SUL_7
AT______CC__AAGG____GG______
9._C_SUL_7
AT______CC__AAGG____GG______
10._C_SUL_7
AT______CC__AAGG____AA______
11._C_SUL_7
AT______CC__AAGG____AA______
12._C_SUL_7
AT______CC__AAGG____AA______
13._C_SUL_7
AT______CC__AAGG____AA______
14._C_SUL_7
AT______CC__AAGG____AA______
15._C_SUL_7
AT______CC__AAGG____AA______
16._C_SUL_7
AT______CG__AGGT____AG______
17._NA
ATTTTTAGCCCCAAGGGGTTAAGGCCGG
18._NA
ATTTTTAGCCCCAAGGGGTTAAGGCCGG
19._NA
ATTTTTAGCCCCAAGGGGTTAAGGCCGG
20._NA
ATTTTTAGCCCCAAGGGGTTAAGGCCGG
21._NA
ATTTTTAGCCCCAAGGGGTTAAGGCCGG
 4344454647484950515253545556
_Input profile
ATCCAGAAAGCTACAGAGGGTTCCGTAG
1._GC-08-261-8-29
ATCCAGAAAGCTACAGAGGGTTCCGTAG
2._GC-08-261-8-29
ATCCAGAAAGCTACAGAGGGTTCCGTAG
3._GC-08-261-8-29
ATCCAGAAAGCTACAGAGGGTTCCGTAG
4._GC-08-261-8-29
ATCCAGAAAGCTACAGAGGGTTCCGTAG
5._C_SUL_7
__CC________________TTCC____
6._C_SUL_7
__CC________________TTCC____
7._C_SUL_7
__CC________________TTCC____
8._C_SUL_7
__CC________________TTCC____
9._C_SUL_7
__CC________________TTCC____
10._C_SUL_7
__TT________________TTCC____
11._C_SUL_7
__TT________________TTCC____
12._C_SUL_7
__TT________________TTCC____
13._C_SUL_7
__TT________________TTCC____
14._C_SUL_7
__TT________________TTCC____
15._C_SUL_7
__TT________________TTCC____
16._C_SUL_7
__CT________________CTCT____
17._NA
TTTTAAGGAACCACGGAAGGTTCCTTGG
18._NA
TTTTAAGGAACCACGGAAGGTTCCTTGG
19._NA
TTTTAAGGAACCACGGAAGGTTCCTTGG
20._NA
TTTTAAGGAACCACGGAAGGTTCCTTGG
21._NA
TTTTAAGGAACCACGGAAGGTTCCTTGG
 5758596061626364656667686970
_Input profile
CGCTTTCGAGACAAGGGGAACTCGAGCT
1._GC-08-261-8-29
CGCTTTCGAGACAAGGGGAACTCGAGCT
2._GC-08-261-8-29
CGCTTTCGAGACAAGGGGAACTCGAGCT
3._GC-08-261-8-29
CGCTTTCGAGACAAGGGGAACTCGAGCT
4._GC-08-261-8-29
CGCTTTCGAGACAAGGGGAACTCGAGCT
5._C_SUL_7
CG__TTCG__ACAAGGGG______AGCT
6._C_SUL_7
CG__TTCG__ACAAGGGG______AGCT
7._C_SUL_7
CG__TTCG__ACAAGGGG______AGCT
8._C_SUL_7
CG__TTCG__ACAAGGGG______AGCT
9._C_SUL_7
CG__TTCG__ACAAGGGG______AGCT
10._C_SUL_7
CG__CTGG__ACAAGGGT______AGCT
11._C_SUL_7
CG__CTGG__ACAAGGGT______AACT
12._C_SUL_7
CG__CTGG__ACAAGGGT______AACT
13._C_SUL_7
CG__CTGG__ACAAGGGT______AACT
14._C_SUL_7
CG__CTGG__ACAAGGGT______AACT
15._C_SUL_7
CG__CTGG__ACAAGGGT______AA__
16._C_SUL_7
CG__CTCG__CCAAGTGG______AGCT
17._NA
CGCCCTGGGGACAAGGGTAACCCCAACT
18._NA
CGCCCTGGGGACAAGGGTAACCCCAACT
19._NA
CGCCCTGGGGACAAGGGTAACCCCAACT
20._NA
CGCCCTGGGGACAAGGGTAACCCCAACT
21._NA
CGCCCTGGGGACAAGGGTAACCCCAA__
 7172737475767778798081828384
_Input profile
ACGGCCACAGACCGCCATCCCTCCCCCT
1._GC-08-261-8-29
ACGGCCACAGACCGCCATCCCTCCCCCT
2._GC-08-261-8-29
ACGGCCACAGACCGCCATCCCTCCCCCT
3._GC-08-261-8-29
ACGGCCACAGACCGCCATCCCTCCCCCT
4._GC-08-261-8-29
ACGGCCACAGACCGCCATCCCTCCCCCT
5._C_SUL_7
__________ACCG______CTCCCC__
6._C_SUL_7
__________ACCG______CTCCCC__
7._C_SUL_7
__________ACCG______CTCCCC__
8._C_SUL_7
__________ACCG______CTCCCC__
9._C_SUL_7
__________ACCG______CTCCCC__
10._C_SUL_7
__________ACCC______CCCCCC__
11._C_SUL_7
__________ACCC______CCCCCC__
12._C_SUL_7
__________ACCC______CCCCCC__
13._C_SUL_7
__________ACCC______CCCCCC__
14._C_SUL_7
__________ACCC______CCCCCC__
15._C_SUL_7
__________ACCC______CC__CC__
16._C_SUL_7
__________ACCG______TTTTCT__
17._NA
CCGGCCCCGGACCCCCAAAACCCCCCCC
18._NA
CCGGCCCCGGACCCCCAAAACCCCCCCC
19._NA
CCGGCCCCGGACCCCCAAAACCCCCCCC
20._NA
CCGGCCCCGGACCCCCAAAACCCCCCCC
21._NA
CCGGCCCCGGACCCCCAAAACC__CCCC
 85868788899091       
_Input profile
GGCCCTGGCTATGGX_XX_XX_XX_XX_XX_XX_X
1._GC-08-261-8-29
GGCCCTGGCTATGGX_XX_XX_XX_XX_XX_XX_X
2._GC-08-261-8-29
GGCCCTGGCTATGGX_XX_XX_XX_XX_XX_XX_X
3._GC-08-261-8-29
GGCCCTGGCTATGGX_XX_XX_XX_XX_XX_XX_X
4._GC-08-261-8-29
GGCCCTGGCTATGGX_XX_XX_XX_XX_XX_XX_X
5._C_SUL_7
GG__CTGGCT____X_XX_XX_XX_XX_XX_XX_X
6._C_SUL_7
GG__CTGGCT____X_XX_XX_XX_XX_XX_XX_X
7._C_SUL_7
GG__CTGGCT____X_XX_XX_XX_XX_XX_XX_X
8._C_SUL_7
GG__CTGGCT____X_XX_XX_XX_XX_XX_XX_X
9._C_SUL_7
GG__CTGGCT____X_XX_XX_XX_XX_XX_XX_X
10._C_SUL_7
GG__CTGGCC____X_XX_XX_XX_XX_XX_XX_X
11._C_SUL_7
GG__CTGGCC____X_XX_XX_XX_XX_XX_XX_X
12._C_SUL_7
GG__CTGGCC____X_XX_XX_XX_XX_XX_XX_X
13._C_SUL_7
GG__CTGGCC____X_XX_XX_XX_XX_XX_XX_X
14._C_SUL_7
GG__CTGGCC____X_XX_XX_XX_XX_XX_XX_X
15._C_SUL_7
GG__CTGGCC____X_XX_XX_XX_XX_XX_XX_X
16._C_SUL_7
AG__CCGTCT____X_XX_XX_XX_XX_XX_XX_X
17._NA
GGCCCTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
18._NA
GGCCCTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
19._NA
GGCCCTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
20._NA
GGCCCTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
21._NA
GGCCCTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X

Input profile: C_SUL_7 GC-08-261-8-29

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._C_SUL_7

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 5
 Dapeng Zhang, 2016

6._C_SUL_7

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._C_SUL_7

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 3
 Dapeng Zhang, 2016

8._C_SUL_7

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 4
 Dapeng Zhang, 2016

9._C_SUL_7

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 7
 Dapeng Zhang, 2016

10._C_SUL_7

77.6 %
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P95 583
 Dapeng Zhang, 2016

11._C_SUL_7

76.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._C_SUL_7

76.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 5
 Dapeng Zhang, 2016

13._C_SUL_7

76.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 6
 Dapeng Zhang, 2016

14._C_SUL_7

76.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 7
 Dapeng Zhang, 2016

15._C_SUL_7

75 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 3
 Dapeng Zhang, 2016

16._C_SUL_7

69.7 %
38 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._C_SUL_7 NA

68.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._C_SUL_7 NA

68.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

19._C_SUL_7 NA

68.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._C_SUL_7 NA

68.7 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

21._C_SUL_7 NA

68 %
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP25
61TcSNP364 62TcSNP144 63TcSNP230 64TcSNP560 65TcSNP723
66TcSNP731 67TcSNP701 68TcSNP1041 69TcSNP645 70TcSNP917
71Tcm003s01336581 72Tcm003s07402719 73Tcm001s00947643 74Tcm006s26664133 75Tcm002s20575712
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP430 80TcSNP823
81TcSNP619 82TcSNP994 83TcSNP1144 84TcSNP1156 85TcSNP469
86TcSNP999 87TcSNP242 88TcSNP1253 89TcSNP1414 90TcSNP154
91TcSNP240