SNP Profiles of IMC 96   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAAGGGCCCCCCCCGGTTCTTT
1._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTT__TT
2._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTTCTTT
3._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTTCTTT
4._IMC_96
AAAACTAA________CCCCGG__CT__
5._IMC_96
AAAACTAA________CCCCGG__CT__
6._IMC_96
AAAACTAA________CCCCGG__CT__
7._IMC_96
AAAACTAA________CCCCGG______
8._IMC_96
AACCCT__________CTCCGG__CT__
9._IMC_96
AACCCT__________CTCCGG__CT__
10._GC-08-255-8-23
AAAACCAAGGGGCCCCCTCCGGTTCCCT
11._IMC_96
AAAACCAA________CTCCGG__CC__
 1516171819202122232425262728
_Input profile
AAAAAAGGGGCCGGCCAATTGGATAACG
1._GC-08-255-8-23
AAAAAAGGGGCCGGCCAATTGGATAACG
2._GC-08-255-8-23
AAAAAAGGGG__GGCCAATTGGATAACG
3._GC-08-255-8-23
AAAAAAGGGGCCGGCCAATTGGATAACG
4._IMC_96
______GG____GG________ATAA__
5._IMC_96
______GG____GG________ATAA__
6._IMC_96
______GG____GG________ATAA__
7._IMC_96
______GG____GG________ATAA__
8._IMC_96
______GG____GG________TTAA__
9._IMC_96
______GG____GG________TTAA__
10._GC-08-255-8-23
AACC__AACGCCCGTTAATTGGATAACC
11._IMC_96
______AA____CG________ATAA__
 2930313233343536373839404142
_Input profile
CCAATTGTAGGGCCGGGGGTTTAACCGG
1._GC-08-255-8-23
CCAATTGTAGGGCCGGGGGTTTAACCGG
2._GC-08-255-8-23
CCAATTGTAGGGCCGGGGGTTTAACCGG
3._GC-08-255-8-23
CCAATTGTAGGGCCGGGGGTTTAACCGG
4._IMC_96
CCAA______GG__GGGG____AA____
5._IMC_96
CCAA______GG__GGGG____AA____
6._IMC_96
CCAA______GG__GGGG____AA____
7._IMC_96
CCAA______GG__GGGG____AA____
8._IMC_96
CCAA______GG__AAGT____AG____
9._IMC_96
CCAA______GG__AAGT____AG____
10._GC-08-255-8-23
GGAATTTTAGCCCCAAGTGGTTAGCTAA
11._IMC_96
GGAA______CC__AAGT____AG____
 4344454647484950515253545556
_Input profile
CCGGTTTTAAGGAACCCCGGAGGGTTCC
1._GC-08-255-8-23
CCGGTTTTAAGGAACCCCGGAGGGTTCC
2._GC-08-255-8-23
CCGGTTTTAAGGAACCCCGGAGGGTTCC
3._GC-08-255-8-23
CCGGTTTTAAGGAACCCCGGAG__TTCC
4._IMC_96
______TT__________________CC
5._IMC_96
______TT__________________CC
6._IMC_96
______TT__________________CC
7._IMC_96
______TT__________________CC
8._IMC_96
______TT__________________CC
9._IMC_96
______TT__________________CC
10._GC-08-255-8-23
CCGGTTTTAAGGAACCCCGGAGGTTTCC
11._IMC_96
______TT__________________CC
 5758596061626364656667686970
_Input profile
CCTTGGCGCCTTAAGGGGACAGGGGGGG
1._GC-08-255-8-23
CCTTGGCGCCTTAAGGGGACAGGGGGGG
2._GC-08-255-8-23
CCTTGGCGCCTTAAGGGGACAGGGGGGG
3._GC-08-255-8-23
CCTTGGCGCCTTAAGGGGACAGGGGGGG
4._IMC_96
CC____CG__TTAAGG__ACAGGGGG__
5._IMC_96
CC____CG__TTAAGG__ACAGGGGG__
6._IMC_96
CC____CG__TTAAGG__ACAGGGGG__
7._IMC_96
CC____CG__TTAAGG__ACAGGGGG__
8._IMC_96
CC________TTACGG__CCAGGTGG__
9._IMC_96
CC________TTACGG__CCAGGTGG__
10._GC-08-255-8-23
CTTTGGCCTTCTAAGGGGCCAAGTGGAG
11._IMC_96
CT____CC__CTAAGG__CCAAGTGG__
 7172737475767778798081828384
_Input profile
TTCCAACTAAAACCACAACCCGCCAACC
1._GC-08-255-8-23
TTCCAACTAAAACCACAACCCGCCAACC
2._GC-08-255-8-23
TTCCAACTAAAACCACAACCCGCCAACC
3._GC-08-255-8-23
TTCCAACTAAAACCACAACCCGCCAACC
4._IMC_96
____AACT__________CCCG______
5._IMC_96
____AACT__________CCCG______
6._IMC_96
____AACT__________CCCG______
7._IMC_96
____AACT__________CCCG______
8._IMC_96
____AACC__________CCCG______
9._IMC_96
____AACC__________CCCG______
10._GC-08-255-8-23
CTCCAACCACAACCAAAAACGGCCATAA
11._IMC_96
____AACC__________ACGG______
 8586878889909192939495   
_Input profile
CCTTCCCTAACCCCGTTTTTGGX_XX_XX_X
1._GC-08-255-8-23
CCTTCCCTAACCCCGTTTTTGGX_XX_XX_X
2._GC-08-255-8-23
CCTTCCCTAACCCCGTTTTTGGX_XX_XX_X
3._GC-08-255-8-23
CCTTCCCTAACCCCGTTTTTGGX_XX_XX_X
4._IMC_96
CCTTCC__AA__CCGTTT____X_XX_XX_X
5._IMC_96
CCTTCC__AA__CCGTTT____X_XX_XX_X
6._IMC_96
CCTTCC__AA__CCGTTT____X_XX_XX_X
7._IMC_96
CCTTCC__AA__CCGTTT____X_XX_XX_X
8._IMC_96
CCTTCC__AA__CTTTCT____X_XX_XX_X
9._IMC_96
CCTTCC__AA__CTTTCT____X_XX_XX_X
10._GC-08-255-8-23
CTCTCTTTAACCCTTTTTAAGGX_XX_XX_X
11._IMC_96
CTCTCT__AA__CTTTTT____X_XX_XX_X

Input profile: IMC_96 GC-08-255-8-23

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._IMC_96 GC-08-255-8-23

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._IMC_96 GC-08-255-8-23

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._IMC_96 GC-08-255-8-23

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._IMC_96

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 6
 Dapeng Zhang, 2016

5._IMC_96

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 5
 Dapeng Zhang, 2016

6._IMC_96

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 2
 Dapeng Zhang, 2016

7._IMC_96

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._IMC_96

80.3 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A46 T2
 Dapeng Zhang, 2016

9._IMC_96

80.3 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D562
 Dapeng Zhang, 2016

10._IMC_96 GC-08-255-8-23

71.3 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._IMC_96

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 4
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240