SNP Profiles of IMC 96   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAAGGGCCCCCCCCGGTTCTTT
1._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTTCTTT
2._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTT__TT
3._GC-08-255-8-23
AAAACTAAAGGGCCCCCCCCGGTTCTTT
4._IMC_96
AAAACTAA________CCCCGG__CT__
5._IMC_96
AAAACTAA________CCCCGG__CT__
6._IMC_96
AAAACTAA________CCCCGG__CT__
7._IMC_96
AAAACTAA________CCCCGG______
8._IMC_96
AACCCT__________CTCCGG__CT__
9._IMC_96
AACCCT__________CTCCGG__CT__
10._GC-08-255-8-23
AAAACCAAGGGGCCCCCTCCGGTTCCCT
11._IMC_96
AAAACCAA________CTCCGG__CC__
 1516171819202122232425262728
_Input profile
AAAAAAGGGGGGCCAATTGGATAACGCC
1._GC-08-255-8-23
AAAAAAGGGGGGCCAATTGGATAACGCC
2._GC-08-255-8-23
AAAAAAGGGGGGCCAATTGGATAACGCC
3._GC-08-255-8-23
AAAAAAGGGGGGCCAATTGGATAACGCC
4._IMC_96
______GG__GG________ATAA__CC
5._IMC_96
______GG__GG________ATAA__CC
6._IMC_96
______GG__GG________ATAA__CC
7._IMC_96
______GG__GG________ATAA__CC
8._IMC_96
______GG__GG________TTAA__CC
9._IMC_96
______GG__GG________TTAA__CC
10._GC-08-255-8-23
AACC__AACGCGTTAATTGGATAACCGG
11._IMC_96
______AA__CG________ATAA__GG
 2930313233343536373839404142
_Input profile
AATTGTAGGGCCGGGGGTTTAACCGGCC
1._GC-08-255-8-23
AATTGTAGGGCCGGGGGTTTAACCGGCC
2._GC-08-255-8-23
AATTGTAGGGCCGGGGGTTTAACCGGCC
3._GC-08-255-8-23
AATTGTAGGGCCGGGGGTTTAACCGGCC
4._IMC_96
AA______GG__GGGG____AA______
5._IMC_96
AA______GG__GGGG____AA______
6._IMC_96
AA______GG__GGGG____AA______
7._IMC_96
AA______GG__GGGG____AA______
8._IMC_96
AA______GG__AAGT____AG______
9._IMC_96
AA______GG__AAGT____AG______
10._GC-08-255-8-23
AATTTTAGCCCCAAGTGGTTAGCTAACC
11._IMC_96
AA______CC__AAGT____AG______
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCCC
1._GC-08-255-8-23
GGTTTTAAGGAACCCCGGAGGGTTCCCC
2._GC-08-255-8-23
GGTTTTAAGGAACCCCGGAGGGTTCCCC
3._GC-08-255-8-23
GGTTTTAAGGAACCCCGGAG__TTCCCC
4._IMC_96
____TT__________________CCCC
5._IMC_96
____TT__________________CCCC
6._IMC_96
____TT__________________CCCC
7._IMC_96
____TT__________________CCCC
8._IMC_96
____TT__________________CCCC
9._IMC_96
____TT__________________CCCC
10._GC-08-255-8-23
GGTTTTAAGGAACCCCGGAGGTTTCCCT
11._IMC_96
____TT__________________CCCT
 5758596061626364656667686970
_Input profile
TTGGCGCCTTAAGGGGACAGGGGGGGTT
1._GC-08-255-8-23
TTGGCGCCTTAAGGGGACAGGGGGGGTT
2._GC-08-255-8-23
TTGGCGCCTTAAGGGGACAGGGGGGGTT
3._GC-08-255-8-23
TTGGCGCCTTAAGGGGACAGGGGGGGTT
4._IMC_96
____CG__TTAAGG__ACAGGGGG____
5._IMC_96
____CG__TTAAGG__ACAGGGGG____
6._IMC_96
____CG__TTAAGG__ACAGGGGG____
7._IMC_96
____CG__TTAAGG__ACAGGGGG____
8._IMC_96
________TTACGG__CCAGGTGG____
9._IMC_96
________TTACGG__CCAGGTGG____
10._GC-08-255-8-23
TTGGCCTTCTAAGGGGCCAAGTGGAGCT
11._IMC_96
____CC__CTAAGG__CCAAGTGG____
 7172737475767778798081828384
_Input profile
CCAACTAAAACCACAACCCGCCAACCCC
1._GC-08-255-8-23
CCAACTAAAACCACAACCCGCCAACCCC
2._GC-08-255-8-23
CCAACTAAAACCACAACCCGCCAACCCC
3._GC-08-255-8-23
CCAACTAAAACCACAACCCGCCAACCCC
4._IMC_96
__AACT__________CCCG______CC
5._IMC_96
__AACT__________CCCG______CC
6._IMC_96
__AACT__________CCCG______CC
7._IMC_96
__AACT__________CCCG______CC
8._IMC_96
__AACC__________CCCG______CC
9._IMC_96
__AACC__________CCCG______CC
10._GC-08-255-8-23
CCAACCACAACCAAAAACGGCCATAACT
11._IMC_96
__AACC__________ACGG______CT
 85868788899091929394    
_Input profile
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
1._GC-08-255-8-23
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
2._GC-08-255-8-23
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
3._GC-08-255-8-23
TTCCCTAACCCCGTTTTTGGX_XX_XX_XX_X
4._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
5._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
6._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
7._IMC_96
TTCC__AA__CCGTTT____X_XX_XX_XX_X
8._IMC_96
TTCC__AA__CTTTCT____X_XX_XX_XX_X
9._IMC_96
TTCC__AA__CTTTCT____X_XX_XX_XX_X
10._GC-08-255-8-23
CTCTTTAACCCTTTTTAAGGX_XX_XX_XX_X
11._IMC_96
CTCT__AA__CTTTTT____X_XX_XX_XX_X

Input profile: IMC_96 GC-08-255-8-23

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._IMC_96 GC-08-255-8-23

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_96 GC-08-255-8-23

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._IMC_96 GC-08-255-8-23

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._IMC_96

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 6
 Dapeng Zhang, 2016

5._IMC_96

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 5
 Dapeng Zhang, 2016

6._IMC_96

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 2
 Dapeng Zhang, 2016

7._IMC_96

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._IMC_96

80.3 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A46 T2
 Dapeng Zhang, 2016

9._IMC_96

80.3 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D562
 Dapeng Zhang, 2016

10._IMC_96 GC-08-255-8-23

71 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._IMC_96

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 4
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240