SNP Profiles of POUND 5 /C   View Data

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 Key

 1234567891011121314
_Input profile
AACTAAGGGGCCCCCCCCGGTTCCTTAA
1._GC-08-165-4-08
AACTAAGGGGCCCCCCCCGGTTCCTTAA
2._GC-08-165-4-08
AACTAAGGGGCCCCCCCCGGTTCCTTAA
3._GC-08-165-4-08
AACTAAGGGGCCCCCCCCGGTTCCTTAA
4._POUND_5_/C
AACTAA________CCCCGG__CC____
5._POUND_5_/C
AACTAA________CCCCGG__CC____
6._POUND_5_/C
AACTAA________CCCCGG__CC____
7._POUND_5_/C
AACTAA________CCCCGG__CC____
8._POUND_5_/C
AACTAA________CCCCGG__CC____
9._GC-01-118-6-15
AA__AAGGGG__GGGG__GGAAGGAATT
10._GC-01-118-6-15
AA__AAGGGG__GGGG__GGAAGGGGTT
 1516171819202122232425262728
_Input profile
AAGGGGCCGGCTAATTGGTTAACCGGAA
1._GC-08-165-4-08
AAGGGGCCGGCTAATTGGTTAACCGGAA
2._GC-08-165-4-08
AAGGGGCCGGCTAATTGGTTAACCGGAA
3._GC-08-165-4-08
AAGGGGCCGGCTAATTGGTTAACCGGAA
4._POUND_5_/C
__GG____GG________TTAA__GGAA
5._POUND_5_/C
__GG____GG________TTAA__GGAA
6._POUND_5_/C
__GG____GG________TTAA__GGAA
7._POUND_5_/C
__GG____GG________TTAA__GGAA
8._POUND_5_/C
__GG____GG________TTAA__GGAA
9._GC-01-118-6-15
AAGGCC__GGAGAAAAGGTTAAGGCCAA
10._GC-01-118-6-15
CCAACC__CCAAGGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTGGGGGGGGGGGGTTAACCGGCCGGTT
1._GC-08-165-4-08
TTGGGGGGGGGGGGTTAACCGGCCGGTT
2._GC-08-165-4-08
TTGGGGGGGGGGGGTTAACCGGCCGGTT
3._GC-08-165-4-08
TTGGGGGGGGGGGGTTAACCGGCCGGTT
4._POUND_5_/C
______GGGGGG____AA__________
5._POUND_5_/C
______GGGGGG____AA__________
6._POUND_5_/C
______GGGGGG____AA__________
7._POUND_5_/C
______GGGGGG____AA__________
8._POUND_5_/C
______GGGGGG____AA__________
9._GC-01-118-6-15
AACCGGGGGGCCCCAAAAGGGGGGCC__
10._GC-01-118-6-15
AACCAACCGGAACCAAGGAAAAGGCC__
 4344454647484950515253545556
_Input profile
TTAAGGAACCCCGGAAGGTTCCCCTTGG
1._GC-08-165-4-08
TTAAGGAACCCCGGAAGGTTCCCCTTGG
2._GC-08-165-4-08
TTAAGGAACCCCGGAAGGTTCCCCTTGG
3._GC-08-165-4-08
TTAAGGAACCCCGGAAGGTTCCCCTTGG
4._POUND_5_/C
TT__________________CCCC____
5._POUND_5_/C
TT__________________CCCC____
6._POUND_5_/C
TT__________________CCCC____
7._POUND_5_/C
TT__________________CCCC____
8._POUND_5_/C
TT__________________CCCC____
9._GC-01-118-6-15
AA__GGAAGG__GGAACCAAGGGGAAGG
10._GC-01-118-6-15
GG__GGAAGG__GGGGAAAAGGAAAAAA
 5758596061626364656667686970
_Input profile
CCCCTTAAGGGGCCAGGGGGGGTTCCAA
1._GC-08-165-4-08
CCCCTTAAGGGGCCAGGGGGGGTTCCAA
2._GC-08-165-4-08
CCCCTTAAGGGGCCAGGGGGGGTTCCAA
3._GC-08-165-4-08
CCCCTTAAGGGGCCAGGGGGGGTTCCAA
4._POUND_5_/C
CC__TTAAGG__CCAGGGGG______AA
5._POUND_5_/C
CC__TTAAGG__CCAGGGGG______AA
6._POUND_5_/C
CC__TTAAGG__CCAGGGGG______AA
7._POUND_5_/C
CC__TTAAGG__CCAGGGGG______AA
8._POUND_5_/C
____TTAAGG__CCAGGGGG______AA
9._GC-01-118-6-15
GGGGAAAAGGGGCCAGCCCCGG______
10._GC-01-118-6-15
GGAAGGAAGGGGAAAAAACCGG______
 7172737475767778798081828384
_Input profile
CCAAAACCACAACCGGCCAACCCCTTCC
1._GC-08-165-4-08
CCAAAACCACAACCGGCCAACCCCTTCC
2._GC-08-165-4-08
CCAAAACCACAACCGGCCAACCCCTTCC
3._GC-08-165-4-08
CCAAAACCACAACCGGCC__CCCCTTCC
4._POUND_5_/C
CC__________CCGG______CCTTCC
5._POUND_5_/C
CC__________CCGG______CCTTCC
6._POUND_5_/C
CC__________CCGG______CCTTCC
7._POUND_5_/C
CC__________CCGG______CCTTCC
8._POUND_5_/C
CC__________CCGG______CCTT__
9._GC-01-118-6-15
GGAAAACCAC__CCCCGGAACCGGAA__
10._GC-01-118-6-15
AAAAAACCAA__CCCCGGTTAAAAAA__
 8586878889909192      
_Input profile
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
1._GC-08-165-4-08
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
2._GC-08-165-4-08
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
3._GC-08-165-4-08
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
4._POUND_5_/C
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
5._POUND_5_/C
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
6._POUND_5_/C
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
7._POUND_5_/C
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
8._POUND_5_/C
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
9._GC-01-118-6-15
AA____GGAAAAAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-118-6-15
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: POUND_5_/C GC-08-165-4-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._POUND_5_/C GC-08-165-4-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

2._POUND_5_/C GC-08-165-4-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

3._POUND_5_/C GC-08-165-4-08

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._POUND_5_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._POUND_5_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

6._POUND_5_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

7._POUND_5_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

8._POUND_5_/C

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

9._POUND_5_/C GC-01-118-6-15

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._POUND_5_/C GC-01-118-6-15

30.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 15, Tree: 13
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240