SNP Profiles of CL-911   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATAACTCCAAAACTCTCCCTAGCTCTCT
1._GC-08-151-3-50
ATAACTCCAAAACTCTCCCTAGCTCTCT
2._GC-08-151-3-50
ATAACTCCAAAACTCTCCCTAGCTCTCT
3._GC-08-151-3-50
ATAACTCCAAAACTCTCCCTAGCTCTCT
4._GC-08-151-3-50
AT__CTCCAAAACTCT__CTAGCTCTCT
5._CL_9_/11
ATAACTCC________CCCTAG__CT__
6._CL_9_/11
ATAACTCC________CCCTAG__CT__
7._CL_9_/11
ATAACTCC________CCCTAG__CT__
8._CL_9_/11
ATAACTCC________CCCTAG__CT__
9._CL_9_/11
AT__CTCC__________CTAG__CT__
10._CL_9_/11
ATCCCCCC________CCTTGG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTACAAAGCGGGGGCCAGCTGGAACCGG
1._GC-08-151-3-50
TTACAAAGCGGGGGCCAGCTGGAACCGG
2._GC-08-151-3-50
TTACAAAGCGGGGGCCAGCTGGAACCGG
3._GC-08-151-3-50
TTACAAAGCGGGGGCCAGCTGGAACCGG
4._GC-08-151-3-50
TTACAAAGCGGGGGCCAGCTGGAACCGG
5._CL_9_/11
______AG____GG________AA__GG
6._CL_9_/11
______AG____GG________AA__GG
7._CL_9_/11
______AG____GG________AA__GG
8._CL_9_/11
______AG____GG________AA__GG
9._CL_9_/11
______AG____GG________AA__GG
10._CL_9_/11
______GG____GG________AA__GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
1._GC-08-151-3-50
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
2._GC-08-151-3-50
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
3._GC-08-151-3-50
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
4._GC-08-151-3-50
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
5._CL_9_/11
AT______CG__AAGG____AG______
6._CL_9_/11
AT______CG__AAGG____AG______
7._CL_9_/11
AT______CG__AAGG____AG______
8._CL_9_/11
AT______CG__AAGG____AG______
9._CL_9_/11
AT______CG__AAGG____AG______
10._CL_9_/11
AT______CC__GGTT____AG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTATCTAAGGAGCTACGGAATTCTCTGT
1._GC-08-151-3-50
GTATCTAAGGAGCTACGGAATTCTCTGT
2._GC-08-151-3-50
GTATCTAAGGAGCTACGGAATTCTCTGT
3._GC-08-151-3-50
GTATCTAAGGAGCTACGGAATTCTCTGT
4._GC-08-151-3-50
GTATCTAAGGAGCTACGGAATTCTCTGT
5._CL_9_/11
____CT________________CTCT__
6._CL_9_/11
____CT________________CTCT__
7._CL_9_/11
____CT________________CTCT__
8._CL_9_/11
____CT________________CTCT__
9._CL_9_/11
____CT________________CTCT__
10._CL_9_/11
____CT________________CCCT__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
1._GC-08-151-3-50
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
2._GC-08-151-3-50
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
3._GC-08-151-3-50
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
4._GC-08-151-3-50
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
5._CL_9_/11
__CC__CTCCCG__CCAAGGGG______
6._CL_9_/11
__CC__CTCCCG__CCAAGGGG______
7._CL_9_/11
__CC__CTCCCG__CCAAGGGG______
8._CL_9_/11
__CC__CTCCCG__CCAAGGGG______
9._CL_9_/11
__CC__CTCCCG__CCAAGGGG______
10._CL_9_/11
__CC__CCCCGG__CCAGGGTT______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AGCTACGGAAACAAACCGCCAAACTTTT
1._GC-08-151-3-50
AGCTACGGAAACAAACCGCCAAACTTTT
2._GC-08-151-3-50
AGCTACGGAAACAAACCGCCAAACTTTT
3._GC-08-151-3-50
AGCTACGGAAACAAACCGCCAAACTTTT
4._GC-08-151-3-50
AGCTACGG__ACAAACCGCC__ACTTTT
5._CL_9_/11
AGCT__________ACCG______TTTT
6._CL_9_/11
AGCT__________ACCG______TTTT
7._CL_9_/11
AGCT__________ACCG______TTTT
8._CL_9_/11
AGCT__________ACCG______TTTT
9._CL_9_/11
AGCT__________ACCG______TTTT
10._CL_9_/11
GGCT__________AACC______TTTT
 85 86 87 88 89 90 91 92 93      
_Input profile
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
1._GC-08-151-3-50
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
2._GC-08-151-3-50
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
3._GC-08-151-3-50
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
4._GC-08-151-3-50
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
5._CL_9_/11
CT__GG__CCGGCT____X_XX_XX_XX_XX_X
6._CL_9_/11
CT__GG__CCGGCT____X_XX_XX_XX_XX_X
7._CL_9_/11
CT__GG__CCGGCT____X_XX_XX_XX_XX_X
8._CL_9_/11
CT__GG__CCGGCT____X_XX_XX_XX_XX_X
9._CL_9_/11
CT__GG__CCGGCT____X_XX_XX_XX_XX_X
10._CL_9_/11
CC__GG__CCGTTT____X_XX_XX_XX_XX_X

Input profile: CL_9_/11 GC-08-151-3-50

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._CL_9_/11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 11
 Dapeng Zhang, 2016

6._CL_9_/11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 9
 Dapeng Zhang, 2016

7._CL_9_/11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 7
 Dapeng Zhang, 2016

8._CL_9_/11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 4
 Dapeng Zhang, 2016

9._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 1
 Dapeng Zhang, 2016

10._CL_9_/11

70.5 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 520
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240