SNP Profiles of CL 9 /11   View Data

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 Key

 1234567891011121314
_Input profile
ATAACTCCAAAACTCTCCCTAGCTCTCT
1._GC-08-151-3-50
ATAACTCCAAAACTCTCCCTAGCTCTCT
2._GC-08-151-3-50
ATAACTCCAAAACTCTCCCTAGCTCTCT
3._GC-08-151-3-50
ATAACTCCAAAACTCTCCCTAGCTCTCT
4._GC-08-151-3-50
AT_CTCCAAAACTCT_CTAGCTCTCT
5._CL_9_/11
ATAACTCC____CCCTAG_CT_
6._CL_9_/11
ATAACTCC____CCCTAG_CT_
7._CL_9_/11
ATAACTCC____CCCTAG_CT_
8._CL_9_/11
ATAACTCC____CCCTAG_CT_
9._CL_9_/11
AT_CTCC_____CTAG_CT_
10._CL_9_/11
ATCCCCCC____CCTTGG_CT_
 1516171819202122232425262728
_Input profile
TTACAAAGCGGGGGCCAGCTGGAACCGG
1._GC-08-151-3-50
TTACAAAGCGGGGGCCAGCTGGAACCGG
2._GC-08-151-3-50
TTACAAAGCGGGGGCCAGCTGGAACCGG
3._GC-08-151-3-50
TTACAAAGCGGGGGCCAGCTGGAACCGG
4._GC-08-151-3-50
TTACAAAGCGGGGGCCAGCTGGAACCGG
5._CL_9_/11
___AG__GG____AA_GG
6._CL_9_/11
___AG__GG____AA_GG
7._CL_9_/11
___AG__GG____AA_GG
8._CL_9_/11
___AG__GG____AA_GG
9._CL_9_/11
___AG__GG____AA_GG
10._CL_9_/11
___GG__GG____AA_GG
 2930313233343536373839404142
_Input profile
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
1._GC-08-151-3-50
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
2._GC-08-151-3-50
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
3._GC-08-151-3-50
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
4._GC-08-151-3-50
ATTTTTGGCGCCAAGGGGTTAGCTAGCG
5._CL_9_/11
AT___CG_AAGG__AG___
6._CL_9_/11
AT___CG_AAGG__AG___
7._CL_9_/11
AT___CG_AAGG__AG___
8._CL_9_/11
AT___CG_AAGG__AG___
9._CL_9_/11
AT___CG_AAGG__AG___
10._CL_9_/11
AT___CC_GGTT__AG___
 4344454647484950515253545556
_Input profile
GTATCTAAGGAGCTACGGAATTCTCTGT
1._GC-08-151-3-50
GTATCTAAGGAGCTACGGAATTCTCTGT
2._GC-08-151-3-50
GTATCTAAGGAGCTACGGAATTCTCTGT
3._GC-08-151-3-50
GTATCTAAGGAGCTACGGAATTCTCTGT
4._GC-08-151-3-50
GTATCTAAGGAGCTACGGAATTCTCTGT
5._CL_9_/11
__CT________CTCT_
6._CL_9_/11
__CT________CTCT_
7._CL_9_/11
__CT________CTCT_
8._CL_9_/11
__CT________CTCT_
9._CL_9_/11
__CT________CTCT_
10._CL_9_/11
__CT________CCCT_
 5758596061626364656667686970
_Input profile
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
1._GC-08-151-3-50
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
2._GC-08-151-3-50
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
3._GC-08-151-3-50
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
4._GC-08-151-3-50
AGCCCTCTCCCGGGCCAAGGGGAGTTCC
5._CL_9_/11
_CC_CTCCCG_CCAAGGGG___
6._CL_9_/11
_CC_CTCCCG_CCAAGGGG___
7._CL_9_/11
_CC_CTCCCG_CCAAGGGG___
8._CL_9_/11
_CC_CTCCCG_CCAAGGGG___
9._CL_9_/11
_CC_CTCCCG_CCAAGGGG___
10._CL_9_/11
_CC_CCCCGG_CCAGGGTT___
 7172737475767778798081828384
_Input profile
AGCTACGGAAACAAACCGCCAAACTTTT
1._GC-08-151-3-50
AGCTACGGAAACAAACCGCCAAACTTTT
2._GC-08-151-3-50
AGCTACGGAAACAAACCGCCAAACTTTT
3._GC-08-151-3-50
AGCTACGGAAACAAACCGCCAAACTTTT
4._GC-08-151-3-50
AGCTACGG_ACAAACCGCC_ACTTTT
5._CL_9_/11
AGCT_____ACCG___TTTT
6._CL_9_/11
AGCT_____ACCG___TTTT
7._CL_9_/11
AGCT_____ACCG___TTTT
8._CL_9_/11
AGCT_____ACCG___TTTT
9._CL_9_/11
AGCT_____ACCG___TTTT
10._CL_9_/11
GGCT_____AACC___TTTT
 858687888990919293     
_Input profile
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
1._GC-08-151-3-50
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
2._GC-08-151-3-50
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
3._GC-08-151-3-50
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
4._GC-08-151-3-50
CTTTGGCCCCGGCTATGGX_XX_XX_XX_XX_X
5._CL_9_/11
CT_GG_CCGGCT__X_XX_XX_XX_XX_X
6._CL_9_/11
CT_GG_CCGGCT__X_XX_XX_XX_XX_X
7._CL_9_/11
CT_GG_CCGGCT__X_XX_XX_XX_XX_X
8._CL_9_/11
CT_GG_CCGGCT__X_XX_XX_XX_XX_X
9._CL_9_/11
CT_GG_CCGGCT__X_XX_XX_XX_XX_X
10._CL_9_/11
CC_GG_CCGTTT__X_XX_XX_XX_XX_X

Input profile: CL_9_/11 GC-08-151-3-50

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._CL_9_/11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 11
 Dapeng Zhang, 2016

6._CL_9_/11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 9
 Dapeng Zhang, 2016

7._CL_9_/11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 7
 Dapeng Zhang, 2016

8._CL_9_/11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 4
 Dapeng Zhang, 2016

9._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._CL_9_/11

70.5 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 520
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240